Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11p22r
(389 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 31 0.083
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.19
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo... 27 0.77
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 26 1.8
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub... 26 2.4
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 26 2.4
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 26 2.4
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 25 4.1
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca... 25 4.1
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa... 25 5.5
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo... 25 5.5
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 25 5.5
SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces ... 24 7.2
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 24 7.2
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po... 24 9.5
SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi... 24 9.5
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 30.7 bits (66), Expect = 0.083
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 85 QVLFVFGGHDLEVYSVVFQHGGK 153
+V +VF GH+ ++YS+ F H G+
Sbjct: 393 KVRYVFSGHEQDIYSLDFSHNGR 415
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.5 bits (63), Expect = 0.19
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = -1
Query: 194 VTPKTKPARKSPGSLP-PCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSSTVIAPLTP 18
+TP P S S+P P T+ + S P T ST S T + SS++ P+TP
Sbjct: 191 ITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTST-SCTTSTSIPTGGSSSLSTPITP 249
Query: 17 S 15
+
Sbjct: 250 T 250
Score = 29.5 bits (63), Expect = 0.19
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = -1
Query: 194 VTPKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSSTVIAPLTPS 15
VTP P S S PP +T T S P +++ S T + T +ST P+TP+
Sbjct: 301 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNST--TPVTPT 358
Score = 29.5 bits (63), Expect = 0.19
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = -1
Query: 194 VTPKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSSTVIAPLTPS 15
VTP P S S PP +T T S P +++ S T + T +ST P+TP+
Sbjct: 355 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNST--TPVTPT 412
Score = 27.5 bits (58), Expect = 0.77
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = -1
Query: 194 VTPKTKPARKSPGSLP-PCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSSTVIAPLTP 18
+TP P S S+P P T+ + S P T ST + + + S+T + P P
Sbjct: 247 ITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVP 306
Score = 26.6 bits (56), Expect = 1.4
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = -1
Query: 188 PKTKPARKSPGSLP-PCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSSTVIAP 27
P T + S P P T+ TS S PP NST + +T V + SST P
Sbjct: 264 PPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNST-TPVTPTVPPTSTSSTSTPP 317
Score = 24.6 bits (51), Expect = 5.5
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Frame = -1
Query: 203 LHSVTPKTKPARKSPGSLPPCW-KTTEYTSRSCPPKTNST*SSI--TRKVLVMTVSSTVI 33
L++ TP T P S S W TT T S T+ST + T + SST I
Sbjct: 598 LYTSTPITSPNSTSSSSTQVSWNSTTPITGTSTSKVTSSTSIPLTSTNRTSTTFTSSTSI 657
Query: 32 APLTPS 15
+ + S
Sbjct: 658 STSSSS 663
>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 739
Score = 27.5 bits (58), Expect = 0.77
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +2
Query: 65 PFVLSSFRYCLSSVDMILKYTLLFSNTGVNFQETFLLVLSLESPNAILLW 214
PF+L++ R C D +KY L+ + F + L+V +L A+L W
Sbjct: 574 PFLLATLRMC-GWGDNQIKYLLVGNPVAYWFATSSLIVFALFVVGAVLAW 622
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 26.2 bits (55), Expect = 1.8
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3
Query: 264 LINKRDHHALKLXDQQNHNKIAFGDSKDKTS 172
L+ K+D A K+ DQ H K+ +DK S
Sbjct: 496 LLTKKDSIANKISDQSEHLKVLEDVQRDKVS 526
>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 25.8 bits (54), Expect = 2.4
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = +1
Query: 19 GVSGAITVDDTVIT 60
G+ GAIT+DD++IT
Sbjct: 120 GIEGAITLDDSIIT 133
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 25.8 bits (54), Expect = 2.4
Identities = 15/67 (22%), Positives = 34/67 (50%)
Frame = -3
Query: 282 TEQTVKLINKRDHHALKLXDQQNHNKIAFGDSKDKTSKKVSWKFTPVLENNRVYFKIMST 103
+ T K +N+++H+ L L ++ FG S D +S ++ + +N YF ++ +
Sbjct: 146 SSDTNKKVNRKEHNELSLSHLSFNDTSDFG-SSDLSSSEIE---STENDNKAPYFSLLYS 201
Query: 102 EDKQYLK 82
+ ++K
Sbjct: 202 DGFDFIK 208
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 25.8 bits (54), Expect = 2.4
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +1
Query: 31 AITVDDTVITRTFRVIELQVLFVFGGHDLEVYSVVFQHGGK 153
A V+D I R + + + +V + GH+ E+YS+ F GK
Sbjct: 350 ATGVEDQQI-RIWDIAQKRVYRLLTGHEQEIYSLDFSKDGK 389
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 25.0 bits (52), Expect = 4.1
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 61 RTFRVIELQVLFVFGGHDLEVYSVVFQ 141
R +RV + L+ GH L +YSV+++
Sbjct: 530 RIWRVSTGECLYHLRGHSLRIYSVLYE 556
>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
catalytic subunit Arm1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 811
Score = 25.0 bits (52), Expect = 4.1
Identities = 11/47 (23%), Positives = 23/47 (48%)
Frame = -3
Query: 162 SWKFTPVLENNRVYFKIMSTEDKQYLKLDNTKGSSDDRIIYGDSXAD 22
+WK ++E R+++ KQYL ++ + D ++ D +D
Sbjct: 538 TWKSISLVERARIHYLTAFKPPKQYLPKCSSPKDNRDLKVFADYGSD 584
>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 652
Score = 24.6 bits (51), Expect = 5.5
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = -3
Query: 195 GDSKDKTSKKVSWKFTPVLENNRVYFKIMSTEDKQYLKL 79
G ++ +S SW F P N R+Y +Q+ +L
Sbjct: 69 GGEREGSSLTHSWTFQPGKHNQRLYSDNFQEAQRQWKRL 107
>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
Pik3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 801
Score = 24.6 bits (51), Expect = 5.5
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Frame = -3
Query: 321 VKSYFPIQXRVIFTEQTVKLINKRDHHALKLX--DQQNHN---KIAFGDSKDKTSKKVSW 157
+K Y P + + VK IN+ D LKL D + N I+FG KD SK +S
Sbjct: 139 IKKYSPTSLEL----EQVKEINRLDGLLLKLQLGDVPSVNWLDDISFGKIKDFRSKHMSL 194
Query: 156 KFTPVLENNRVYFKIMSTEDKQY 88
P+L + + F + Y
Sbjct: 195 VTIPILYLDFLQFSFPVVFQRSY 217
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 24.6 bits (51), Expect = 5.5
Identities = 10/42 (23%), Positives = 23/42 (54%)
Frame = -3
Query: 171 KKVSWKFTPVLENNRVYFKIMSTEDKQYLKLDNTKGSSDDRI 46
+++ W + + R ++ ++ED+Q+L L K +D +I
Sbjct: 77 QEIPWNYQDITIELRARIRLFASEDRQWLTL-TYKTKTDSKI 117
>SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 388
Score = 24.2 bits (50), Expect = 7.2
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +2
Query: 155 FQETFLLVLSLESPNAILLWFCWSIN 232
++E+F+ + +SP+AIL+ F S N
Sbjct: 66 YRESFIRLAKCDSPDAILVRFLASCN 91
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 24.2 bits (50), Expect = 7.2
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 112 DLEVYSVVFQHGGKLPGDFLAGFVFGVTECNF 207
DLE +V Q+ G G+FL G FG + F
Sbjct: 411 DLEENRIVRQYMGHKLGNFLIGSCFGGKDDTF 442
>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 23.8 bits (49), Expect = 9.5
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = +3
Query: 171 CWFCLWSHRMQF 206
CW CLWS F
Sbjct: 125 CWICLWSMIFHF 136
>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 23.8 bits (49), Expect = 9.5
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +3
Query: 177 FCLWSHRMQFCC 212
FCLWSHR C
Sbjct: 177 FCLWSHRFIPAC 188
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,592,503
Number of Sequences: 5004
Number of extensions: 30899
Number of successful extensions: 135
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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