Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11p22r
(389 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0259 - 1996427-1998772 29 1.3
05_03_0469 + 14439472-14440905 28 2.3
01_05_0346 + 21191542-21191783,21191988-21192072,21192159-211924... 28 2.3
11_06_0273 - 21810317-21810535,21810673-21810740,21810879-21810960 27 5.3
11_03_0193 - 11437237-11437533,11438834-11439643 27 5.3
01_06_0129 - 26770543-26770720,26774592-26774719,26774829-267749... 27 5.3
11_06_0722 - 26678873-26680843 27 7.0
11_04_0358 + 16725417-16725422,16725789-16725858,16727825-167286... 27 7.0
08_02_1198 + 25204896-25206755 27 7.0
05_05_0230 - 23476919-23477372,23477656-23477695,23478578-234787... 26 9.2
03_06_0522 - 34494989-34495045,34495171-34495234,34495378-344954... 26 9.2
>03_01_0259 - 1996427-1998772
Length = 781
Score = 29.1 bits (62), Expect = 1.3
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -3
Query: 288 IFTEQTVKLINKRDHHALKLXDQQNHNKIAFGDSK 184
I ++ V++ N HHALKL + + +I GDSK
Sbjct: 732 ILVKKNVRICN-HCHHALKLISRYSGRRIVVGDSK 765
>05_03_0469 + 14439472-14440905
Length = 477
Score = 28.3 bits (60), Expect = 2.3
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = -1
Query: 194 VTPKTKPARKSPGS--LPPCWKTTEYTSRSCPP 102
+T T+ AR PG+ +PP W+ T+RS PP
Sbjct: 187 LTAVTEFARGVPGAPTVPPVWEREALTTRSWPP 219
>01_05_0346 +
21191542-21191783,21191988-21192072,21192159-21192422,
21192518-21192820,21193695-21193799,21193916-21194020,
21194613-21194712,21195614-21195933,21196183-21196359,
21196432-21196560,21196592-21196636,21196851-21197078
Length = 700
Score = 28.3 bits (60), Expect = 2.3
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = -3
Query: 204 IAFGDSKDKTSKKVSWKFTPVLENNRVYFKIMSTEDKQYLKLDNT 70
I F D K+K K K +EN+ + F +M+ D QYL +NT
Sbjct: 354 ILFNDMKEKGVKSGK-KCVLSMENHGIGFLLMAYNDVQYLVPNNT 397
>11_06_0273 - 21810317-21810535,21810673-21810740,21810879-21810960
Length = 122
Score = 27.1 bits (57), Expect = 5.3
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = -1
Query: 188 PKTKPARKSPGSLPPCWKTTEYT-SRSCPP 102
PKTK R G+ P W + T SRS PP
Sbjct: 51 PKTKQPRGVKGTRRPSWSSWSSTASRSSPP 80
>11_03_0193 - 11437237-11437533,11438834-11439643
Length = 368
Score = 27.1 bits (57), Expect = 5.3
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +1
Query: 25 SGAITVDDTVITRTFRVIELQVLFVFGGHD 114
SG DDT T T+R+ L L V G D
Sbjct: 84 SGVFAADDTTDTGTYRLTPLSCLLVDGDDD 113
>01_06_0129 -
26770543-26770720,26774592-26774719,26774829-26774933,
26775661-26775788,26777332-26777433,26778760-26778861,
26779777-26779852,26779971-26780059,26780177-26780230,
26780482-26780614,26780671-26780797,26781590-26781648
Length = 426
Score = 27.1 bits (57), Expect = 5.3
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -3
Query: 243 HALKLXDQQNHNKIAFGDSKDKTSKKVSWKFTPVLE 136
H L D NHN + + K TS K + +PV E
Sbjct: 31 HLLAFYDIHNHNLLDYSTEKPLTSVKTFFNNSPVRE 66
>11_06_0722 - 26678873-26680843
Length = 656
Score = 26.6 bits (56), Expect = 7.0
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 28 GAITVDDTVITRTFRVIELQVLFV 99
G + D + RTFRVIE+++ FV
Sbjct: 240 GGLLHGDRCVERTFRVIEVELAFV 263
>11_04_0358 +
16725417-16725422,16725789-16725858,16727825-16728693,
16729109-16729198,16730071-16730356,16730573-16730592
Length = 446
Score = 26.6 bits (56), Expect = 7.0
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +1
Query: 43 DDTVITRTFRVIELQVLFVFGGHDLEVYSVVFQHGGKLPGDFLAGFVFG 189
DDT V+ ++ V GG D+ V F GG + L GF+FG
Sbjct: 155 DDTTTEDDLMVVSAELEKVLGGVDVASARVSFAMGGGVDCP-LQGFLFG 202
>08_02_1198 + 25204896-25206755
Length = 619
Score = 26.6 bits (56), Expect = 7.0
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = -3
Query: 186 KDKTSKKVSWKFTPVLENNRVYFKIMSTEDKQYLKLDNTKGSSDDRIIYGDS 31
+DK + K S + VL +YF+ Q + +G SDD IY S
Sbjct: 267 QDKMTAKESLIWLGVLRREEIYFRSSDNVGSQITHRSSREGKSDD--IYSSS 316
>05_05_0230 -
23476919-23477372,23477656-23477695,23478578-23478700,
23479114-23479151,23479289-23479674,23479875-23481053,
23481805-23481928,23482733-23482779
Length = 796
Score = 26.2 bits (55), Expect = 9.2
Identities = 19/58 (32%), Positives = 25/58 (43%)
Frame = -1
Query: 200 HSVTPKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSSTVIAP 27
HS P T+PAR + + P T +S S S +R SSTV+AP
Sbjct: 67 HSTAP-TRPARSNSVTRPSIQSTLMSSSNRTAVLNTSISSVSSRPTTPSRRSSTVVAP 123
>03_06_0522 -
34494989-34495045,34495171-34495234,34495378-34495494,
34495878-34496032,34496221-34496319,34496464-34496593,
34496727-34496866,34497050-34497239,34497346-34497547,
34497589-34497631
Length = 398
Score = 26.2 bits (55), Expect = 9.2
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 71 VLSSFRYCLSSVDMILKYTLLFSNTGVNFQETFLLVLSLESPNAILL 211
+LS YC++S MIL ++ SN N + +L +L S +L+
Sbjct: 109 LLSGICYCIASCSMILLNKVVLSNYNFNAGISLMLYQNLISVIILLV 155
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,391,025
Number of Sequences: 37544
Number of extensions: 200014
Number of successful extensions: 623
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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