Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11p22r
         (389 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    23   1.6  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   1.6  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    22   2.9  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   5.0  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    20   8.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    20   8.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   8.7  

>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +1

Query: 73  VIELQVLFVFGGHDLEVYSVVFQHGGKLPGD 165
           VI +  + V    +L+  +V+F+HG ++P +
Sbjct: 3   VIAILAMVVGVQAELKQINVIFRHGDRIPDE 33


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 136 KQQSILQDHVHRRQTVPEAR*HERF 62
           + Q ++Q HV    T+PE +   RF
Sbjct: 386 RNQDVVQTHVLTIHTIPEVKVTPRF 410


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 6/18 (33%), Positives = 14/18 (77%)
 Frame = +1

Query: 112 DLEVYSVVFQHGGKLPGD 165
           +L+  +V+F+HG ++P +
Sbjct: 1   ELKQINVIFRHGDRIPDE 18


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 268 QAHKQKGPSRPQVDXPTKPQQNCIR*LQRQNQQE 167
           Q H+Q+      V    +PQQ   +  Q+Q QQ+
Sbjct: 422 QQHQQQQQQTQHVINAQQPQQQQQQQQQQQQQQQ 455


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 4/8 (50%), Positives = 7/8 (87%)
 Frame = +3

Query: 165 LSCWFCLW 188
           + C+FC+W
Sbjct: 218 IMCYFCIW 225


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 4/8 (50%), Positives = 7/8 (87%)
 Frame = +3

Query: 165 LSCWFCLW 188
           + C+FC+W
Sbjct: 271 IMCYFCIW 278


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 223  PTKPQQNCIR*LQRQNQQESL 161
            P +PQQ   +  Q+Q QQ+ L
Sbjct: 1447 PQQPQQQQQQQQQQQQQQQQL 1467


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,165
Number of Sequences: 438
Number of extensions: 2003
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9514659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)