Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11p19r
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|...    31   0.13 
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    28   1.2  
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo...    27   2.0  
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    27   2.7  
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb...    26   4.7  
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S...    26   4.7  
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy...    26   4.7  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    25   8.2  
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar...    25   8.2  
SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase |Sc...    25   8.2  

>SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 274

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
 Frame = -2

Query: 313 NADSNSYL-EFGEKDANGIQP-LIGSDRASSERFQWYLVPDKNAATSEIFFYIYNRKFND 140
           NA S S+L ++G  D  G++P LI +     +R+ W+     +       F+I N  F  
Sbjct: 31  NAPSLSWLMKYGGHDNFGLKPPLIATKLEVPKRWFWHFYAFISLLNPLFTFFILNTNFPI 90

Query: 139 PIEINLKEN 113
           PI  N+KE+
Sbjct: 91  PIFKNIKED 99


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 10/80 (12%)
 Frame = -2

Query: 268 NGIQPLIGSDRASS--------ERFQWYLVPDKNAATSEIFFYIY--NRKFNDPIEINLK 119
           N I P IG  R S         ERF  +  P+  A  SE    +   +R +N PIEI + 
Sbjct: 48  NTISPFIGDGRGSDIFNYEYYDERFH-FCRPENIAKQSESLGSVLFGDRLYNSPIEIKML 106

Query: 118 ENSNDEQQLFGELTRTDVNF 59
           EN +        +  +DV+F
Sbjct: 107 ENQDCVPLCASIIPSSDVSF 126


>SPAC3C7.07c |||arginine-tRNA protein transferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 17/78 (21%), Positives = 39/78 (50%)
 Frame = -2

Query: 346 WESNKLYFKIWNADSNSYLEFGEKDANGIQPLIGSDRASSERFQWYLVPDKNAATSEIFF 167
           W   + +  +WN  +  Y+ FG+++ + IQ  +  D  SSE          +++ +E  +
Sbjct: 245 WIPIENFTSLWNTGAPKYISFGDENNSDIQTAVDYD--SSE----------DSSQNEDDY 292

Query: 166 YIYNRKFNDPIEINLKEN 113
            ++NR+    + +N+ E+
Sbjct: 293 TLFNRQLPGILSVNVAES 310


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = +2

Query: 197 VGHQIPLESFAAGSVRAY*WLNTIGILFA--EFKVGIGVRIPN-FEVELVALPQWLEY 361
           VG Q+PL S AA S+R Y        +FA  E+     + IPN F   + A   W+ Y
Sbjct: 250 VGEQLPLPSSAAASLRGY-------SVFAPGEYTYNFDLAIPNCFPESVEAKMGWVRY 300


>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 440

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 678 LYLAIMTTPHLLLNGYIQTTSANFKKLFR 592
           LYL+   T HL  +G I+    N+K LFR
Sbjct: 54  LYLSEFGTKHLRRHGRIEKKRRNWKGLFR 82


>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -2

Query: 112 SNDEQQLFGELTRTDVNFEHYGWN 41
           +NDE++++GE T   V ++ Y +N
Sbjct: 88  ANDEEEIWGEETNESVVYKEYTYN 111


>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 478

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -2

Query: 715 ISAEYNKQLYDSVISGDYDHAASIAKRLHTNNVSELQETISK 590
           ++ E N++  D++   D D AAS+   L  +  +E  +T+SK
Sbjct: 256 VTKELNEEQLDALRKKDKDTAASVLAELFGSENTEEIDTVSK 297


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 29/103 (28%), Positives = 41/103 (39%)
 Frame = -2

Query: 364 WVFKPLWESNKLYFKIWNADSNSYLEFGEKDANGIQPLIGSDRASSERFQWYLVPDKNAA 185
           WVF    E NKL +K        Y  F E   N     +     ++ +    L P+ N  
Sbjct: 106 WVFDS--EKNKLDYKAVTYVPGLYKIFDEIIVNAADNKVRDPNMNTLKVT--LDPEANVI 161

Query: 184 TSEIFFYIYNRKFNDPIEINLKENSNDEQQLFGELTRTDVNFE 56
           +      IYN     PIEI+ KE     + +FG L  T  N++
Sbjct: 162 S------IYNNGKGIPIEIHDKEKIYIPELIFGNLL-TSSNYD 197


>SPAC27F1.04c |nuf2||spindle pole body protein
           Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 157 NRKFNDPIEINLKENSNDEQQLFGELTRTDVNFEH 53
           N++  D IEIN K+    ++QL  +L+      EH
Sbjct: 315 NQELCDQIEINKKKLEFRKEQLLKQLSNAQEKLEH 349


>SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
 Frame = -2

Query: 283 GEKDANGIQPLIGSDRASSERFQWYLVPDKNAATSEIFFYIYNRKFND--PIEINLKENS 110
           G +D NGI+PL+  +R + E   + L  +    T   F Y   R F D  P E      S
Sbjct: 184 GFRDPNGIRPLVIGERDTPEGKDYMLASESVVLTQ--FGY---RTFRDIRPGECVFIRRS 238

Query: 109 NDEQQLFG 86
           N E  L G
Sbjct: 239 NREDILAG 246


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,973,218
Number of Sequences: 5004
Number of extensions: 62778
Number of successful extensions: 181
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)