Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11p19r
(719 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ335469-1|ABC59821.1| 5005|Homo sapiens fragile site-associated... 31 3.1
AK124902-1|BAC85988.1| 1168|Homo sapiens protein ( Homo sapiens ... 31 3.1
AB037792-1|BAA92609.1| 395|Homo sapiens KIAA1371 protein protein. 31 3.1
U22680-1|AAA98503.1| 1088|Homo sapiens X2 box repressor protein. 31 4.1
U22314-1|AAB17211.1| 1097|Homo sapiens REST protein protein. 31 4.1
U13879-1|AAC50115.1| 681|Homo sapiens neuron-restrictive silenc... 31 4.1
U13877-1|AAC50114.1| 316|Homo sapiens neural-restrictive silenc... 31 4.1
BC132859-1|AAI32860.1| 1097|Homo sapiens RE1-silencing transcrip... 31 4.1
BC038985-1|AAH38985.1| 454|Homo sapiens Similar to RE1-silencin... 31 4.1
BC017822-1|AAH17822.1| 460|Homo sapiens Unknown (protein for IM... 31 4.1
AF228045-1|AAF61710.1| 149|Homo sapiens truncated neuron restri... 31 4.1
AB209750-1|BAD92987.1| 1126|Homo sapiens RE1-silencing transcrip... 31 4.1
BC112922-1|AAI12923.1| 218|Homo sapiens SCN1B protein protein. 31 5.5
U12193-1|AAB97608.1| 218|Homo sapiens voltage-gated sodium chan... 30 7.3
L16242-1|AAA61277.1| 218|Homo sapiens voltage-gated sodium chan... 30 7.3
L10338-1|AAA60391.1| 218|Homo sapiens sodium channel beta-1 sub... 30 7.3
DQ677665-1|ABQ01236.1| 218|Homo sapiens sodium channel beta-1 s... 30 7.3
BT019923-1|AAV38726.1| 218|Homo sapiens sodium channel, voltage... 30 7.3
BC067122-1|AAH67122.1| 218|Homo sapiens sodium channel, voltage... 30 7.3
BC021266-1|AAH21266.2| 186|Homo sapiens SCN1B protein protein. 30 7.3
>DQ335469-1|ABC59821.1| 5005|Homo sapiens fragile site-associated
protein protein.
Length = 5005
Score = 31.5 bits (68), Expect = 3.1
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +1
Query: 151 CDCKYKKISPT*RHFCRAPNTTGIFRCWLCPS-LLVVEYHWHP 276
C K + P R+ + +G CW PS +L ++Y WHP
Sbjct: 626 CQSGQKTVKPKWRNVTQ--EKSGWVECWTVPSVMLTIDYTWHP 666
>AK124902-1|BAC85988.1| 1168|Homo sapiens protein ( Homo sapiens
cDNA FLJ42912 fis, clone BRHIP3024533. ).
Length = 1168
Score = 31.5 bits (68), Expect = 3.1
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +1
Query: 151 CDCKYKKISPT*RHFCRAPNTTGIFRCWLCPS-LLVVEYHWHP 276
C K + P R+ + +G CW PS +L ++Y WHP
Sbjct: 380 CQSGQKTVKPKWRNVTQ--EKSGWVECWTVPSVMLTIDYTWHP 420
>AB037792-1|BAA92609.1| 395|Homo sapiens KIAA1371 protein protein.
Length = 395
Score = 31.5 bits (68), Expect = 3.1
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +1
Query: 151 CDCKYKKISPT*RHFCRAPNTTGIFRCWLCPS-LLVVEYHWHP 276
C K + P R+ + +G CW PS +L ++Y WHP
Sbjct: 37 CQSGQKTVKPKWRNVTQ--EKSGWVECWTVPSVMLTIDYTWHP 77
>U22680-1|AAA98503.1| 1088|Homo sapiens X2 box repressor protein.
Length = 1088
Score = 31.1 bits (67), Expect = 4.1
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +1
Query: 187 RHFCRAPNTTGIFRCWLCPSLLVVEYHWHPFRR 285
+H RA + +++C +C V EYHW R
Sbjct: 235 KHHTRAGDNERVYKCIICTYTTVSEYHWRKHLR 267
>U22314-1|AAB17211.1| 1097|Homo sapiens REST protein protein.
Length = 1097
Score = 31.1 bits (67), Expect = 4.1
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +1
Query: 187 RHFCRAPNTTGIFRCWLCPSLLVVEYHWHPFRR 285
+H RA + +++C +C V EYHW R
Sbjct: 236 KHHTRAGDNERVYKCIICTYTTVSEYHWRKHLR 268
>U13879-1|AAC50115.1| 681|Homo sapiens neuron-restrictive silencer
factor protein.
Length = 681
Score = 31.1 bits (67), Expect = 4.1
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +1
Query: 187 RHFCRAPNTTGIFRCWLCPSLLVVEYHWHPFRR 285
+H RA + +++C +C V EYHW R
Sbjct: 318 KHHTRAGDNERVYKCIICTYTTVSEYHWRKHLR 350
>U13877-1|AAC50114.1| 316|Homo sapiens neural-restrictive silencer
factor protein.
Length = 316
Score = 31.1 bits (67), Expect = 4.1
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +1
Query: 187 RHFCRAPNTTGIFRCWLCPSLLVVEYHWHPFRR 285
+H RA + +++C +C V EYHW R
Sbjct: 239 KHHTRAGDNERVYKCIICTYTTVSEYHWRKHLR 271
>BC132859-1|AAI32860.1| 1097|Homo sapiens RE1-silencing
transcription factor protein.
Length = 1097
Score = 31.1 bits (67), Expect = 4.1
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +1
Query: 187 RHFCRAPNTTGIFRCWLCPSLLVVEYHWHPFRR 285
+H RA + +++C +C V EYHW R
Sbjct: 236 KHHTRAGDNERVYKCIICTYTTVSEYHWRKHLR 268
>BC038985-1|AAH38985.1| 454|Homo sapiens Similar to RE1-silencing
transcription factor protein.
Length = 454
Score = 31.1 bits (67), Expect = 4.1
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +1
Query: 187 RHFCRAPNTTGIFRCWLCPSLLVVEYHWHPFRR 285
+H RA + +++C +C V EYHW R
Sbjct: 236 KHHTRAGDNERVYKCIICTYTTVSEYHWRKHLR 268
>BC017822-1|AAH17822.1| 460|Homo sapiens Unknown (protein for
IMAGE:4690075) protein.
Length = 460
Score = 31.1 bits (67), Expect = 4.1
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +1
Query: 187 RHFCRAPNTTGIFRCWLCPSLLVVEYHWHPFRR 285
+H RA + +++C +C V EYHW R
Sbjct: 236 KHHTRAGDNERVYKCIICTYTTVSEYHWRKHLR 268
>AF228045-1|AAF61710.1| 149|Homo sapiens truncated neuron
restrictive silencer factor isoform protein.
Length = 149
Score = 31.1 bits (67), Expect = 4.1
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +1
Query: 187 RHFCRAPNTTGIFRCWLCPSLLVVEYHWHPFRR 285
+H RA + +++C +C V EYHW R
Sbjct: 45 KHHTRAGDNERVYKCIICTYTTVSEYHWRKHLR 77
>AB209750-1|BAD92987.1| 1126|Homo sapiens RE1-silencing
transcription factor variant protein.
Length = 1126
Score = 31.1 bits (67), Expect = 4.1
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +1
Query: 187 RHFCRAPNTTGIFRCWLCPSLLVVEYHWHPFRR 285
+H RA + +++C +C V EYHW R
Sbjct: 265 KHHTRAGDNERVYKCIICTYTTVSEYHWRKHLR 297
>BC112922-1|AAI12923.1| 218|Homo sapiens SCN1B protein protein.
Length = 218
Score = 30.7 bits (66), Expect = 5.5
Identities = 11/58 (18%), Positives = 29/58 (50%)
Frame = -2
Query: 712 SAEYNKQLYDSVISGDYDHAASIAKRLHTNNVSELQETISKLISDKIRNLVDFSYRLW 539
S +Y +Y + +Y+H S+ K++H V + ++ ++S+ + ++ +W
Sbjct: 116 SGDYECHVYRLLFFDNYEHNTSVVKKIHLEVVDKANRDMASIVSEIMMYVLIVVLTIW 173
>U12193-1|AAB97608.1| 218|Homo sapiens voltage-gated sodium channel
beta-1 subunit protein.
Length = 218
Score = 30.3 bits (65), Expect = 7.3
Identities = 11/58 (18%), Positives = 29/58 (50%)
Frame = -2
Query: 712 SAEYNKQLYDSVISGDYDHAASIAKRLHTNNVSELQETISKLISDKIRNLVDFSYRLW 539
S +Y +Y + +Y+H S+ K++H V + ++ ++S+ + ++ +W
Sbjct: 116 SGDYECHVYRLLFFENYEHNTSVVKKIHIEVVDKANRDMASIVSEIMMYVLIVVLTIW 173
>L16242-1|AAA61277.1| 218|Homo sapiens voltage-gated sodium channel
type I, beta subunit protein.
Length = 218
Score = 30.3 bits (65), Expect = 7.3
Identities = 11/58 (18%), Positives = 29/58 (50%)
Frame = -2
Query: 712 SAEYNKQLYDSVISGDYDHAASIAKRLHTNNVSELQETISKLISDKIRNLVDFSYRLW 539
S +Y +Y + +Y+H S+ K++H V + ++ ++S+ + ++ +W
Sbjct: 116 SGDYECHVYRLLFFENYEHNTSVVKKIHIEVVDKANRDMASIVSEIMMYVLIVVLTIW 173
>L10338-1|AAA60391.1| 218|Homo sapiens sodium channel beta-1
subunit protein.
Length = 218
Score = 30.3 bits (65), Expect = 7.3
Identities = 11/58 (18%), Positives = 29/58 (50%)
Frame = -2
Query: 712 SAEYNKQLYDSVISGDYDHAASIAKRLHTNNVSELQETISKLISDKIRNLVDFSYRLW 539
S +Y +Y + +Y+H S+ K++H V + ++ ++S+ + ++ +W
Sbjct: 116 SGDYECHVYRLLFFENYEHNTSVVKKIHIEVVDKANRDMASIVSEIMMYVLIVVLTIW 173
>DQ677665-1|ABQ01236.1| 218|Homo sapiens sodium channel beta-1
subunit precursor protein.
Length = 218
Score = 30.3 bits (65), Expect = 7.3
Identities = 11/58 (18%), Positives = 29/58 (50%)
Frame = -2
Query: 712 SAEYNKQLYDSVISGDYDHAASIAKRLHTNNVSELQETISKLISDKIRNLVDFSYRLW 539
S +Y +Y + +Y+H S+ K++H V + ++ ++S+ + ++ +W
Sbjct: 116 SGDYECHVYRLLFFENYEHNTSVVKKIHIEVVDKANRDMASIVSEIMMYVLIVVLTIW 173
>BT019923-1|AAV38726.1| 218|Homo sapiens sodium channel,
voltage-gated, type I, beta protein.
Length = 218
Score = 30.3 bits (65), Expect = 7.3
Identities = 11/58 (18%), Positives = 29/58 (50%)
Frame = -2
Query: 712 SAEYNKQLYDSVISGDYDHAASIAKRLHTNNVSELQETISKLISDKIRNLVDFSYRLW 539
S +Y +Y + +Y+H S+ K++H V + ++ ++S+ + ++ +W
Sbjct: 116 SGDYECHVYRLLFFENYEHNTSVVKKIHIEVVDKANRDMASIVSEIMMYVLIVVLTIW 173
>BC067122-1|AAH67122.1| 218|Homo sapiens sodium channel,
voltage-gated, type I, beta protein.
Length = 218
Score = 30.3 bits (65), Expect = 7.3
Identities = 11/58 (18%), Positives = 29/58 (50%)
Frame = -2
Query: 712 SAEYNKQLYDSVISGDYDHAASIAKRLHTNNVSELQETISKLISDKIRNLVDFSYRLW 539
S +Y +Y + +Y+H S+ K++H V + ++ ++S+ + ++ +W
Sbjct: 116 SGDYECHVYRLLFFENYEHNTSVVKKIHIEVVDKANRDMASIVSEIMMYVLIVVLTIW 173
>BC021266-1|AAH21266.2| 186|Homo sapiens SCN1B protein protein.
Length = 186
Score = 30.3 bits (65), Expect = 7.3
Identities = 11/58 (18%), Positives = 29/58 (50%)
Frame = -2
Query: 712 SAEYNKQLYDSVISGDYDHAASIAKRLHTNNVSELQETISKLISDKIRNLVDFSYRLW 539
S +Y +Y + +Y+H S+ K++H V + ++ ++S+ + ++ +W
Sbjct: 84 SGDYECHVYRLLFFENYEHNTSVVKKIHIEVVDKANRDMASIVSEIMMYVLIVVLTIW 141
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,123,654
Number of Sequences: 237096
Number of extensions: 1880398
Number of successful extensions: 7436
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 7313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7436
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8455186714
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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