Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11p19f
(607 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_02_0096 - 5248369-5248479,5248562-5248604,5249093-5249178,525... 30 1.6
09_06_0311 + 22218219-22218421,22219157-22219422,22219881-222200... 29 3.8
11_06_0613 - 25509044-25509118,25509256-25511275,25511632-25512467 28 5.0
11_03_0188 - 11338013-11338976,11339843-11340183 28 5.0
09_02_0615 - 11251869-11252832,11253699-11254039 28 5.0
06_03_0490 - 21375400-21376363,21377230-21377570 28 5.0
06_02_0143 - 12266120-12267083,12267950-12268290 28 5.0
06_02_0141 + 12259098-12259438,12260305-12261268 28 5.0
05_01_0260 - 1993075-1994312,1996249-1997191 28 5.0
03_02_0921 + 12414932-12416569 28 5.0
02_04_0118 + 19924184-19924524,19925391-19926354 28 5.0
04_03_0037 - 9991176-9991268,9991403-9991474,9991569-9991928,999... 27 8.7
>10_02_0096 -
5248369-5248479,5248562-5248604,5249093-5249178,
5250089-5250153,5252539-5252747,5253077-5253188,
5253271-5253322,5254593-5254685,5254997-5255146,
5255223-5255327,5255858-5255891,5256145-5256281,
5257691-5257819,5257899-5257977,5258081-5258156,
5258981-5259070,5259181-5259259,5259397-5259431,
5260722-5260811,5260913-5261027
Length = 629
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +2
Query: 128 NKQLYDSVISGDYDHAASIAKRLHTNNVS 214
+++ +D++++GD+D A K LHTN S
Sbjct: 34 SREFHDALVAGDFDRARVHPKFLHTNATS 62
>09_06_0311 + 22218219-22218421,22219157-22219422,22219881-22220050,
22220149-22220365,22220798-22221021,22221559-22221738,
22221875-22222013,22222107-22222255,22223394-22223505,
22223998-22224506,22224661-22224784,22224904-22225178,
22225507-22225626,22225707-22225769,22225861-22226052,
22226381-22226440,22226535-22226738,22226926-22227051,
22227093-22227254,22227357-22227476,22227665-22227820,
22227895-22227957,22228041-22228168,22228524-22228920,
22229442-22229544,22229646-22229776,22230096-22230167,
22230472-22230553,22231083-22231190,22231288-22231429,
22231659-22231698,22231746-22231876,22232215-22232301,
22232395-22232605,22232687-22232741,22232836-22232927,
22233011-22233071,22233361-22233719
Length = 2010
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 395 IKLTPGQNKAIINISDNTNVRSSWVFKPLWESNKL 499
+ LTP N +II I NT+V W K L ++++
Sbjct: 1823 LNLTPSCNHSIITIGGNTDVELFWNAKDLLSASRV 1857
>11_06_0613 - 25509044-25509118,25509256-25511275,25511632-25512467
Length = 976
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/50 (30%), Positives = 28/50 (56%)
Frame = -1
Query: 502 VELVALPQWLEYPTAPHVSIIRDIYYCLILPRCQLY*ITIFRVRYFDSSV 353
V L +LP++L+ P HV I+ +Y+ +LP + I + + + D S+
Sbjct: 758 VHLDSLPEFLDLPQHIHVLGIKPMYFFTVLPVWFNFPIDLPYLSFLDLSI 807
>11_03_0188 - 11338013-11338976,11339843-11340183
Length = 434
Score = 28.3 bits (60), Expect = 5.0
Identities = 9/29 (31%), Positives = 20/29 (68%)
Frame = -1
Query: 346 K*SELYWKVIGDDFSRSGSPQSVRKIDEI 260
K + +WK + D+F+R G+ + R+I+++
Sbjct: 211 KKGDTFWKEVTDEFNRKGNGKRTREINQL 239
>09_02_0615 - 11251869-11252832,11253699-11254039
Length = 434
Score = 28.3 bits (60), Expect = 5.0
Identities = 9/29 (31%), Positives = 20/29 (68%)
Frame = -1
Query: 346 K*SELYWKVIGDDFSRSGSPQSVRKIDEI 260
K + +WK + D+F+R G+ + R+I+++
Sbjct: 211 KKGDTFWKEVTDEFNRKGNGKRTREINQL 239
>06_03_0490 - 21375400-21376363,21377230-21377570
Length = 434
Score = 28.3 bits (60), Expect = 5.0
Identities = 9/29 (31%), Positives = 20/29 (68%)
Frame = -1
Query: 346 K*SELYWKVIGDDFSRSGSPQSVRKIDEI 260
K + +WK + D+F+R G+ + R+I+++
Sbjct: 211 KKGDTFWKEVTDEFNRKGNGKRTREINQL 239
>06_02_0143 - 12266120-12267083,12267950-12268290
Length = 434
Score = 28.3 bits (60), Expect = 5.0
Identities = 9/29 (31%), Positives = 20/29 (68%)
Frame = -1
Query: 346 K*SELYWKVIGDDFSRSGSPQSVRKIDEI 260
K + +WK + D+F+R G+ + R+I+++
Sbjct: 211 KKGDTFWKEVTDEFNRKGNGKRTREINQL 239
>06_02_0141 + 12259098-12259438,12260305-12261268
Length = 434
Score = 28.3 bits (60), Expect = 5.0
Identities = 9/29 (31%), Positives = 20/29 (68%)
Frame = -1
Query: 346 K*SELYWKVIGDDFSRSGSPQSVRKIDEI 260
K + +WK + D+F+R G+ + R+I+++
Sbjct: 211 KKGDTFWKEVTDEFNRKGNGKRTREINQL 239
>05_01_0260 - 1993075-1994312,1996249-1997191
Length = 726
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +1
Query: 478 TVGEQQALLQNLECGLQFLP*IRRKGCQWYSTT 576
T GE++ ++ +E LQF+ IR++ CQ + T
Sbjct: 645 TKGEERPTMKEVEMRLQFVRTIRQRKCQQFPVT 677
>03_02_0921 + 12414932-12416569
Length = 545
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/64 (29%), Positives = 33/64 (51%)
Frame = +2
Query: 23 RD*LEPIQDIKTAKEMKKLVLIALLFFAQTISAEYNKQLYDSVISGDYDHAASIAKRLHT 202
RD + I + + +K L L+ A T+S +YN L ++GD+D A ++ + L
Sbjct: 98 RDCAKRIMGLPVEERVKVLDLLQRDDGALTVS-DYNDILSALAMAGDHDSAVALFRALRP 156
Query: 203 NNVS 214
N V+
Sbjct: 157 NGVT 160
>02_04_0118 + 19924184-19924524,19925391-19926354
Length = 434
Score = 28.3 bits (60), Expect = 5.0
Identities = 9/29 (31%), Positives = 20/29 (68%)
Frame = -1
Query: 346 K*SELYWKVIGDDFSRSGSPQSVRKIDEI 260
K + +WK + D+F+R G+ + R+I+++
Sbjct: 211 KKGDTFWKEVTDEFNRKGNGKRTREINQL 239
>04_03_0037 -
9991176-9991268,9991403-9991474,9991569-9991928,
9992466-9992555,9992692-9992782,9993530-9993729,
9998024-9998101,9998196-9998312,10000017-10000112,
10000192-10000317,10000533-10000629,10000979-10001023,
10002106-10002179,10002267-10002350,10002439-10002522,
10002660-10002851,10003775-10003903,10004061-10004093,
10004190-10004286,10004833-10004883,10005211-10005289,
10005480-10005552,10005595-10005691,10006392-10006473,
10008345-10008691,10010271-10010535,10010624-10010743,
10010971-10011358
Length = 1219
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = +2
Query: 338 RLFYNDRAIKITDAKYGYSIKLTPGQNKAIINISDNTNVRSSWVFKPLWESNKLYFKI 511
R+F +D + KI K Y +P Q + + I ++NVR+ L E N YF I
Sbjct: 486 RIFMSDMSGKIPLYKKAYVFFSSPVQRELVAQIKKDSNVRAR--IGALSEMNLEYFAI 541
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,776,676
Number of Sequences: 37544
Number of extensions: 280837
Number of successful extensions: 728
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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