Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11p19f
         (607 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49067-3|CAA88852.3|  591|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z34799-8|CAA84319.3|  591|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AF016436-1|AAC25897.3|  292|Caenorhabditis elegans Hypothetical ...    29   3.4  
U41007-17|AAA82261.1|  507|Caenorhabditis elegans Hypothetical p...    28   4.5  
AF025459-6|AAN63405.1|  328|Caenorhabditis elegans Fumarase prot...    27   7.9  
AF025459-5|AAB70982.1|  501|Caenorhabditis elegans Fumarase prot...    27   7.9  

>Z49067-3|CAA88852.3|  591|Caenorhabditis elegans Hypothetical
           protein C44F1.1 protein.
          Length = 591

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/58 (25%), Positives = 32/58 (55%)
 Frame = +2

Query: 203 NNVSELQETISKLISDKIRNLVDFSYRLWTTGSREIITDNFPIQFRLFYNDRAIKITD 376
           N +  L+ ++   + ++ R+L +   RL     RE + D+FP++ + F  +++I I D
Sbjct: 234 NELQLLEISLFGSVENQQRDLHEEMKRLRNRLLREPVMDSFPVERKEFITEKSISILD 291


>Z34799-8|CAA84319.3|  591|Caenorhabditis elegans Hypothetical
           protein C44F1.1 protein.
          Length = 591

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/58 (25%), Positives = 32/58 (55%)
 Frame = +2

Query: 203 NNVSELQETISKLISDKIRNLVDFSYRLWTTGSREIITDNFPIQFRLFYNDRAIKITD 376
           N +  L+ ++   + ++ R+L +   RL     RE + D+FP++ + F  +++I I D
Sbjct: 234 NELQLLEISLFGSVENQQRDLHEEMKRLRNRLLREPVMDSFPVERKEFITEKSISILD 291


>AF016436-1|AAC25897.3|  292|Caenorhabditis elegans Hypothetical
           protein F38H12.5 protein.
          Length = 292

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 8/56 (14%)
 Frame = -2

Query: 213 LTLFVCSRLAIDAAW----S*SPDITLSY----NCLLYSALIVWAKNKSAIKTSFF 70
           +T+F C++L +D  W      SPD+TL Y      +LYS  I++      I T+ F
Sbjct: 18  ITIFFCAKLLLDIYWFKTLKRSPDLTLFYFRFLMDILYSITIIFFLLSILITTTSF 73


>U41007-17|AAA82261.1|  507|Caenorhabditis elegans Hypothetical
           protein C33H5.2 protein.
          Length = 507

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +2

Query: 20  VRD*LEPIQDIKTAKEMKKLV--LIALLFFAQTISAEYNKQLYDSVISGDYD 169
           ++D  + +Q ++   E+KKL   L  + +++  +   YN++ YD   SG Y+
Sbjct: 401 IKDIEDDLQRMRNKPEIKKLFAELPKIRYYSDLVLKCYNEKFYDYFYSGRYE 452


>AF025459-6|AAN63405.1|  328|Caenorhabditis elegans Fumarase protein
           1, isoform b protein.
          Length = 328

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 164 YDHAASIAKRLHTNNVSELQETI 232
           YD+AA IAK  H N  + +QE +
Sbjct: 283 YDNAAKIAKTAHKNGTTLVQEAV 305


>AF025459-5|AAB70982.1|  501|Caenorhabditis elegans Fumarase protein
           1, isoform a protein.
          Length = 501

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 164 YDHAASIAKRLHTNNVSELQETI 232
           YD+AA IAK  H N  + +QE +
Sbjct: 456 YDNAAKIAKTAHKNGTTLVQEAV 478


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,457,097
Number of Sequences: 27780
Number of extensions: 275257
Number of successful extensions: 863
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)