Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11p19f
         (607 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    25   0.76 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    24   1.0  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   3.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.4  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   7.1  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   9.4  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 24.6 bits (51), Expect = 0.76
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 159 PDITLSYNCLLYSALIVWAKNKSAIKTSFFISLAVFI 49
           P + +S+ C+L   L   A  K  +  S  +SL VF+
Sbjct: 243 PTVLISFLCVLVFYLPAEAGEKVTLGISILLSLVVFL 279


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
 Frame = +2

Query: 362 IKITDAKYGYSIKLTPGQNKAIIN----ISDNTNVRSSWVFKPLWESNKLYFKIWNADSN 529
           +++ D +Y   +  T G  +A+ N     ++  N+RS+    P     K  +++WN    
Sbjct: 135 LQVFDCRY---VTTTSGMFEALCNHIKYSTNKGNIRSAITIFPQRTDGKHDYRVWNHQLI 191

Query: 530 SYLEFGEKD 556
           SY  +   D
Sbjct: 192 SYAGYKNPD 200


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +2

Query: 422 AIINISDNTNVRSSWVFKPLWESNKLYFKIW 514
           A++  S    V   W+F  LW S  L   +W
Sbjct: 117 AVLPFSATWEVFKVWIFGDLWCSIWLAVDVW 147


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -1

Query: 517 IPNFEVELVALPQWLEYPT 461
           +P+F  +LV +  WL+ P+
Sbjct: 154 VPSFVKDLVRVVSWLQEPS 172


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -1

Query: 517 IPNFEVELVALPQWLEYPT 461
           +P+F  +LV +  WL+ P+
Sbjct: 154 VPSFVKDLVRVVSWLQEPS 172


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 309 ISLDPVVHSLYEKSTRLRILSDINFE 232
           ++L PV H+LY  S     L  +N E
Sbjct: 255 MALSPVTHNLYYNSPSSENLYYVNTE 280


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = +2

Query: 122 EYNKQLYDSV-ISGDYDHAASIAKRLHT 202
           EYN  LY S   S DY  +    KRLH+
Sbjct: 85  EYNNHLYGSTPDSRDY-FSRPFEKRLHS 111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,889
Number of Sequences: 438
Number of extensions: 3650
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)