Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11p18r
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi...    31   0.23 
SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc...    29   0.72 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    29   0.72 
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    28   1.7  
SPAC24B11.05 |||pyrimidine 5'-nucleotidase |Schizosaccharomyces ...    27   2.2  
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    27   3.8  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   3.8  
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p...    26   6.7  
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    26   6.7  
SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces pombe...    25   8.8  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    25   8.8  
SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyc...    25   8.8  

>SPCC576.13 |swc5||chromatin remodeling complex subunit
           Swc5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 215

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
 Frame = -3

Query: 729 VVADYDSAVE--KSKH--LYEEKKSEVITNVVNKLIRNNKMNCMEYAYQLWLQGSKD 571
           V  D +S  E  K KH  + + +KS + ++   K+++ NK+N +E A Q W +  K+
Sbjct: 119 VEGDENSYAETPKKKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNWSKYIKE 175


>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -3

Query: 405 VSWKFIALWENNKVYFKILNTERNQYLVLGVGTNPNG 295
           + +K I L++NN+   KILN  R    V+ VGT  NG
Sbjct: 254 IFFKCIPLFKNNEEAEKILNVNRLLDRVMFVGTKVNG 290


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 27/107 (25%), Positives = 50/107 (46%)
 Frame = -1

Query: 749 SSFTIASSLPITTVRLKRASIYTRRRRAKSSQM**TN*YETTR*TAWSTPINFGSRAPRT 570
           S++TI+SS P+T+  +   +  T      +S    +    TT  T  ST + + S    +
Sbjct: 512 SNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNCTT-STSVPYTSTPVTS 570

Query: 569 SSVIVSQLSSDLSSPKTPLSLCTSATVSL*R*VMMFTATMADLPSAT 429
           S+  +S  +   S+P T  +  TS +V       ++T+T    P++T
Sbjct: 571 SNYTISSSTPVTSTPVTTTNCTTSTSV-------LYTSTPITSPNST 610


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -3

Query: 420 KTSPKVSWKFIALWENNKVYFKILNTERNQYLVLGVGTN 304
           K SPKV+WK   +W + K   K +++      +LG G++
Sbjct: 28  KASPKVNWKTHIIWRSLK-NVKCIDSFHGNNEILGAGSS 65


>SPAC24B11.05 |||pyrimidine 5'-nucleotidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 226

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -3

Query: 744 LYHSIVVADYDSAVEKSKHLYEE-KKSEVITNVVNKLIRNNKMNCMEYAY 598
           L+H I   DYD  V++S  L +  KK EV+  ++ +L +  K      AY
Sbjct: 66  LHHEIDAVDYDQRVDQSLPLEKVIKKDEVLREMLLELRKKYKCWIFTNAY 115


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 675 KKSEVITNVVNKLIRNNKMNCMEYAYQLWLQ 583
           K+   +T+  NKL+ ++  +  +YAY L LQ
Sbjct: 35  KREAQLTDTPNKLLTDHDQSASDYAYALKLQ 65


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -1

Query: 587 SRAPRTSSVIVSQLSSDLSSP-KTPLSLCTSATVS 486
           S  P T S + S LSS  SSP  T LS+ +S+T S
Sbjct: 567 SSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSS 601


>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 926

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 25/91 (27%), Positives = 39/91 (42%)
 Frame = -3

Query: 354  ILNTERNQYLVLGVGTNPNGDHMAFGVNSVDSFRAQWYLQPAKYDKDNLFYIYNREYSKA 175
            +++T  +Q+L +G    P     AFGVNS+   +A  +  P     DN     N   +  
Sbjct: 813  LVDTHIHQFLYIGKDAVPQLLIDAFGVNSLADLKAGRFTMPV---IDNPL---NVRINAI 866

Query: 174  LTLSRTLETSGNRMAWGYNGRVIGSPEHYAW 82
            L   R+L+     M   Y  R  G P+  +W
Sbjct: 867  LGKLRSLDKGSTIMPSLYLVRGDGDPQLRSW 897


>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 753 EEQLYHSIVVADYDSAVEKSKHLYEEKKSEVITNVVN 643
           EE  +H+  +A  DS  E+  H+  E ++E+   VVN
Sbjct: 136 EESEFHASKIAKIDSRNEEITHIPFETQTELNAAVVN 172


>SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 182

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 322 YQILVTLSVQDLEVDLVVLPQSNELPADF 408
           +Q+ V  ++QDL+  L   PQ N L  +F
Sbjct: 3   FQVRVKQNMQDLDNRLAAFPQLNSLEKNF 31


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 747 QLYHSIVVADYDSAVEKSKHLYEEKKS 667
           QL +     DY+   E++K LY+E+KS
Sbjct: 184 QLQNENFKDDYEKIKEENKRLYKERKS 210


>SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -3

Query: 753 EEQLYHSIVVADYDSAVEKSKHLYEE-KKSEVITNVVNKLIRNNKMN 616
           E  L H  +VA   S++EKSK LY+   K ++  +VV    R ++MN
Sbjct: 280 EYMLEHGGLVALEASSIEKSKLLYDTLDKHDLYISVVEPAAR-SRMN 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,965,060
Number of Sequences: 5004
Number of extensions: 59589
Number of successful extensions: 195
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)