Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11p16r
(760 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81037-5|CAB02752.1| 320|Caenorhabditis elegans Hypothetical pr... 114 6e-26
Z81550-4|CAB04477.1| 317|Caenorhabditis elegans Hypothetical pr... 105 5e-23
Z82262-6|CAB05149.1| 374|Caenorhabditis elegans Hypothetical pr... 52 3e-07
U80029-6|AAB37586.1| 199|Caenorhabditis elegans Hypothetical pr... 30 1.6
U80030-3|AAG24160.2| 367|Caenorhabditis elegans Serpentine rece... 29 2.7
Z22176-11|CAA80141.1| 784|Caenorhabditis elegans Hypothetical p... 29 3.6
AL132895-4|CAC14401.1| 333|Caenorhabditis elegans Hypothetical ... 29 3.6
Z82055-10|CAB04848.2| 659|Caenorhabditis elegans Hypothetical p... 28 6.3
AL110500-9|CAE54920.1| 586|Caenorhabditis elegans Hypothetical ... 28 8.3
AL110500-8|CAB60430.1| 551|Caenorhabditis elegans Hypothetical ... 28 8.3
AF025464-2|AAN84804.1| 496|Caenorhabditis elegans Prion-like-(q... 28 8.3
AF025464-1|AAN84805.1| 529|Caenorhabditis elegans Prion-like-(q... 28 8.3
>Z81037-5|CAB02752.1| 320|Caenorhabditis elegans Hypothetical
protein C17E4.9 protein.
Length = 320
Score = 114 bits (275), Expect = 6e-26
Identities = 65/228 (28%), Positives = 117/228 (51%), Gaps = 6/228 (2%)
Frame = -1
Query: 760 FRPTLRRSPAVSSVXGN--DPGSQQFWVKKLSTFLAAYKRDG---KKAGAGQNIHNCDFK 596
++P L+ P + + N D S + +++++ T+L Y + ++ GAG + N D +
Sbjct: 100 YQPWLKERPDSTLIKYNLRDQKSYKAYLEQMKTYLTKYDSNATETRECGAGDS--NDDLE 157
Query: 595 LPPPAGKVCDVDISAWGP-CVQDNYFGYHKSTPCIFLKLNKIYGWRPKFYNSSDNLPKDM 419
P A C D+S + C + + FGY PC+ + LN++ GWRP Y + +
Sbjct: 158 KNPDA-LPCRFDLSVFDKGCSEKSDFGYKSGKPCVIISLNRLIGWRPTDYQENS-----V 211
Query: 418 PEDLKEHIRNMTAYDKNYLNMVWVSCQGENPADRENIGPIQYLPHRGFPGYYFPYTNQEG 239
PE++K D+ + ++C+G D+E+IG + Y+P G G Y+PY +G
Sbjct: 212 PEEVK---------DRYKAGSIAINCRGATNVDQEHIGKVTYMPSNGIDGRYYPYVFTKG 262
Query: 238 YLSPLVAVHLQRPKTGMLINIECRAWANNIKYERLEAMGSVHIEMLIE 95
Y P+ V L+ +ECRA+A NI+++ +G V+ E+++E
Sbjct: 263 YQQPIAMVKFDTIPRNKLVIVECRAYALNIEHDISSRLGMVYFEVMVE 310
>Z81550-4|CAB04477.1| 317|Caenorhabditis elegans Hypothetical
protein F55F3.3 protein.
Length = 317
Score = 105 bits (251), Expect = 5e-23
Identities = 58/226 (25%), Positives = 109/226 (48%), Gaps = 4/226 (1%)
Frame = -1
Query: 760 FRPTLRRSPAVSSVXGN--DPGSQQFWVKKLSTFLAAYKRDGKKAGAGQNIHNCDFKLPP 587
++P L+ +P + + N D S + +VK+L +L+ YK + G + +N +
Sbjct: 97 YQPWLKENPDSTLIKFNLQDSKSWEPYVKQLDNYLSKYKNTNETRDCGASDNNDALETDT 156
Query: 586 PAGKVCDVDISAW--GPCVQDNYFGYHKSTPCIFLKLNKIYGWRPKFYNSSDNLPKDMPE 413
C D+ + C + +GY PC+ + LN++ GWRP Y+ +PE
Sbjct: 157 DTFP-CRFDLGLFEKANCGAKDQYGYKSGKPCVAVSLNRLIGWRPVNYDDGS-----VPE 210
Query: 412 DLKEHIRNMTAYDKNYLNMVWVSCQGENPADRENIGPIQYLPHRGFPGYYFPYTNQEGYL 233
++K + + ++C+G D+E++G ++Y+P G G Y+PY Y
Sbjct: 211 EIKGRYKP---------GSITINCEGATSFDKEHLGKVKYIPETGIDGRYYPYVFVPSYQ 261
Query: 232 SPLVAVHLQRPKTGMLINIECRAWANNIKYERLEAMGSVHIEMLIE 95
P+ V L+ +ECRA+A+NI+++ +G V+ E+ +E
Sbjct: 262 QPIAMVKFDTIPRNKLVIVECRAYASNIEHDISTRLGMVYFELFVE 307
>Z82262-6|CAB05149.1| 374|Caenorhabditis elegans Hypothetical
protein C43F9.6 protein.
Length = 374
Score = 52.4 bits (120), Expect = 3e-07
Identities = 42/118 (35%), Positives = 47/118 (39%)
Frame = -1
Query: 523 FGYHKSTPCIFLKLNKIYGWRPKFYNSSDNLPKDMPEDLKEHIRNMTAYDKNYLNMVWVS 344
FGY K PCI LKLNKI GW P + S N K DL + +
Sbjct: 242 FGYSKGQPCIMLKLNKIVGWVPNL-SPSKNKTKCPSGDL--------CCGQG----IKFK 288
Query: 343 CQGENPADRENIGPIQYLPHRGFPGYYFPYTNQEGYLSPLVAVHLQRPKTGMLINIEC 170
C AD + +Y P G P YFPY NQ GY P V L IEC
Sbjct: 289 CTSN--ADVK----FEYFPKTGIPTCYFPYANQGGYEQPYQMVKLTNITVNRETTIEC 340
>U80029-6|AAB37586.1| 199|Caenorhabditis elegans Hypothetical
protein T20D4.11 protein.
Length = 199
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = -1
Query: 466 WRPKFYNSSDNLPKDMPEDLKEHIRNMTAYDKNYLNMVWVSCQG 335
W+P FY+ ++ P PE+++E +NM D ++V +C G
Sbjct: 135 WKP-FYDLNEVGPDTTPEEMEELCKNMLGKDNCMKDLVGRTCGG 177
>U80030-3|AAG24160.2| 367|Caenorhabditis elegans Serpentine
receptor, class w protein115 protein.
Length = 367
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 531 SCTQGPHALMSTSQTFPAGGGSLKSQLWMF 620
SC +GPH + + S F A G L ++F
Sbjct: 193 SCAKGPHHIFAVSDLFTANDGFLAKYFYLF 222
>Z22176-11|CAA80141.1| 784|Caenorhabditis elegans Hypothetical
protein ZK1098.3 protein.
Length = 784
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -1
Query: 499 CIFLKLNKIYGWRPKFYNSSDNLPKDMPEDLKEHIRNMTAYDKNYL 362
CI+ + + W Y++ D K MP DLKE + N T KN L
Sbjct: 349 CIYERRIEALFWAT--YSNIDRNSKYMPPDLKEELENPTTEMKNGL 392
>AL132895-4|CAC14401.1| 333|Caenorhabditis elegans Hypothetical
protein Y59A8A.4 protein.
Length = 333
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -1
Query: 286 HRGFPGYYFPYTNQEGYLSPLVAVHLQRPKTGMLINIECRA 164
H+GF + ++ G LS L+ ++LQ P ++ I C++
Sbjct: 270 HQGFNNVVYICSSLHGVLSTLIMIYLQNPYRAVVKRIFCQS 310
>Z82055-10|CAB04848.2| 659|Caenorhabditis elegans Hypothetical
protein T26H2.7 protein.
Length = 659
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Frame = +1
Query: 220 LQEGSGILLGWCRGSSIPGSLG--EVGTVWDQCSRDQLGSRLGRKPKPCL-GSSY 375
+ EG G LGWCR + + G L +G W G K L GS+Y
Sbjct: 411 IYEGVGTPLGWCRHTGLHGKLKIMTIGNSWTANHAKMFYQECGFLAKSILQGSAY 465
>AL110500-9|CAE54920.1| 586|Caenorhabditis elegans Hypothetical
protein Y87G2A.8b protein.
Length = 586
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 292 GTVWDQCSRDQLGSRLGRK 348
G +WD CS DQ G LG++
Sbjct: 535 GIIWDICSYDQWGVELGKQ 553
>AL110500-8|CAB60430.1| 551|Caenorhabditis elegans Hypothetical
protein Y87G2A.8a protein.
Length = 551
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 292 GTVWDQCSRDQLGSRLGRK 348
G +WD CS DQ G LG++
Sbjct: 500 GIIWDICSYDQWGVELGKQ 518
>AF025464-2|AAN84804.1| 496|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
isoform a protein.
Length = 496
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = -1
Query: 289 PHRGFPGYYFPYTNQEGYLSPLVAVHLQRPKTGMLINIECRAWANNIKYERLEAMGSV 116
PH+ + +PY Q+ SP P M N+ C A+ ++I +++ E MGS+
Sbjct: 294 PHQQWTPQGYPYGYQQNPNSP------PNPALMMDANLPCSAFTDDICHQQREQMGSL 345
>AF025464-1|AAN84805.1| 529|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
isoform b protein.
Length = 529
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = -1
Query: 289 PHRGFPGYYFPYTNQEGYLSPLVAVHLQRPKTGMLINIECRAWANNIKYERLEAMGSV 116
PH+ + +PY Q+ SP P M N+ C A+ ++I +++ E MGS+
Sbjct: 316 PHQQWTPQGYPYGYQQNPNSP------PNPALMMDANLPCSAFTDDICHQQREQMGSL 367
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,940,502
Number of Sequences: 27780
Number of extensions: 410702
Number of successful extensions: 1013
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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