Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11p16f
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    29   0.73 
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos...    27   2.2  
SPBC725.02 |mpr1|spy1|response regulator phosphotransferase |Sch...    27   2.9  
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    26   3.9  
SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe...    26   5.1  
SPBC21C3.16c |spt4||transcription elongation factor complex subu...    25   6.8  
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta...    25   6.8  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   9.0  
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    25   9.0  

>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 28.7 bits (61), Expect = 0.73
 Identities = 20/59 (33%), Positives = 26/59 (44%)
 Frame = +2

Query: 242 RTGSSWSKIALFYFIFYSALAILVAICMWTFLQLLDARQPKWQLERSIIGTNPGLGFRP 418
           R  SS     ++Y I    L I  AICM+T   +  AR   W + R +      L FRP
Sbjct: 316 RNASSIIYTLMYYLIIAPTLLITSAICMFTIFFVPCAR-TLWAICRHLRTCPLSLSFRP 373


>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 131 TSLERFNMYYREKEPPLTRSQKVKRFIWNPK 223
           TS +RFN+Y  ++  P T+SQ ++    N +
Sbjct: 449 TSDKRFNLYVTQRNDPNTKSQLIESLPMNSR 479


>SPBC725.02 |mpr1|spy1|response regulator phosphotransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 18/46 (39%), Positives = 22/46 (47%)
 Frame = +3

Query: 351 LGNRNGSSRGASLALTQGWASGQRLRRSPAVSSGTREMTRVANSSG 488
           +  RNG +R ASLA T   +      RSP+  S      RV N SG
Sbjct: 20  VARRNGQARNASLAKTLHDSGIAERARSPS-GSAIPHAYRVMNGSG 64


>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +2

Query: 5   LSSFGGSAWTQSLRVLSRVTSTLNEFHRTSIKMTVKKRTSDL 130
           LSS GG   T S       ++TLN    T++  T K  TS +
Sbjct: 101 LSSLGGKYNTSSTTTTLTTSTTLNTSSGTTLNSTSKTTTSSV 142


>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +1

Query: 310 SRYLHVDVPPAFGC*ATEMAAREEHHWH*PRAGLQANASG 429
           + Y+  ++P  +G         ++HH H P      NASG
Sbjct: 44  NEYVEPNIPAVYGSMIPVAQQLQQHHVHTPGESFADNASG 83


>SPBC21C3.16c |spt4||transcription elongation factor complex subunit
           Spt4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 105

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 493 FNPELLATRVISLVPDDTAGDLRRRWPEAQP 401
           F P + ATRV  ++ +D    LRRR    +P
Sbjct: 68  FTPGIYATRVQGVLNEDVVESLRRRGINYRP 98


>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -2

Query: 433 DLRRRWPEAQPWVSANDAPLELPFRLPSIQKLEERPHADS 314
           D + + P+  P  +A   P  + FR+  I+K  + P+ADS
Sbjct: 262 DKKEKAPKEPP-KAATPVPSMIDFRIGFIEKAVKHPNADS 300


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -3

Query: 261 DQLDPVLPQNCLVFGFQMNRFTF 193
           DQ    + Q CL FG  MN F F
Sbjct: 852 DQFGNYVVQTCLKFGAPMNDFVF 874


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1057

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 305  ILVAICMWTFLQLLDARQPKWQLERSIIG 391
            +++A C+W   QLL   +P   L+R  +G
Sbjct: 919  VVIAACLWNNPQLLVLDEPTNFLDRDALG 947


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,653,083
Number of Sequences: 5004
Number of extensions: 53804
Number of successful extensions: 144
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)