Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11p16f
         (626 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1151 + 34937738-34937855,34937959-34939244                       28   5.3  
01_06_0903 + 32862551-32864752,32865341-32865535,32866219-328665...    28   5.3  
07_03_1509 - 27246721-27247350                                         28   7.0  
05_03_0627 - 16342211-16342264,16342332-16342412,16342751-163428...    28   7.0  
05_03_0238 - 10783451-10783735,10784686-10785762                       28   7.0  
04_01_0221 + 2795975-2796836,2797001-2797517,2797967-2798516           28   7.0  
03_05_0508 - 25024826-25026439                                         27   9.2  
03_02_0361 - 7800879-7801484,7801614-7802513                           27   9.2  

>01_06_1151 + 34937738-34937855,34937959-34939244
          Length = 467

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 19/61 (31%), Positives = 30/61 (49%)
 Frame = +3

Query: 363 NGSSRGASLALTQGWASGQRLRRSPAVSSGTREMTRVANSSGLKSYPPS*LRTSAMAKKL 542
           +GSS G+   +    A+  R R SP  S   +E+   ++S G   Y PS + +S+M    
Sbjct: 152 DGSSYGSDNDVPTSAAASYRRRASPLTS---QELEASSSSMGSSGYQPSGVSSSSMGSSS 208

Query: 543 V 545
           V
Sbjct: 209 V 209


>01_06_0903 + 32862551-32864752,32865341-32865535,32866219-32866523,
            32866664-32866849,32867137-32867314,32867548-32867574
          Length = 1030

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
 Frame = +1

Query: 76   RISQNQHKNDG*ETNIRPDELRAIQHVLQGEGTTSNQISK---SETVHLEPEDQAV---- 234
            + ++ Q  +D   + I     R  Q  LQ +  T   I+K     +  L+P D A     
Sbjct: 846  KTTETQRTHDSSPSAIAKTSFRRKQSQLQADSATIEPINKLINKFSQRLDPIDWATYEPY 905

Query: 235  LWKNRI*LVKNSIVLFYLLLRTRH 306
            LW+N     K  +VLF  L++  H
Sbjct: 906  LWENEKQSYKRYVVLFGFLVQLNH 929


>07_03_1509 - 27246721-27247350
          Length = 209

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 229 PGLRVPDEPFHFLRSG 182
           PG   P  PFHFLR+G
Sbjct: 115 PGATFPPSPFHFLRAG 130


>05_03_0627 -
           16342211-16342264,16342332-16342412,16342751-16342849,
           16343660-16343770,16343964-16344116,16344741-16344881,
           16345456-16345513,16345852-16345967,16346292-16346405,
           16346496-16346557,16348788-16348930,16349030-16349097,
           16349200-16349379,16349835-16350013,16350447-16350636,
           16350920-16350978,16351421-16351574,16352133-16352158,
           16352567-16353014
          Length = 811

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 451 PDDTAGDLRRRWPEAQPWVSANDAPLELP 365
           PD  A D+ R+ PE + ++    AP E+P
Sbjct: 267 PDPVAADILRKEPEQESFIKLLTAPHEIP 295


>05_03_0238 - 10783451-10783735,10784686-10785762
          Length = 453

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 19/68 (27%), Positives = 30/68 (44%)
 Frame = -3

Query: 591 AGGGSLKSQLWMFWPAPAFLPSRLYAAKKVDSFLTQNCWLPGSFPLYQMTLLATSGGVGL 412
           +GGG +      F  A +F+PSR    ++    L  +   PG        L  +SG V +
Sbjct: 286 SGGGKVVKHSEAFRKAKSFMPSRNSLLEQAKKMLEPSFGQPGEC----FALQGSSGYVEI 341

Query: 411 KPSPGLVP 388
           K   G++P
Sbjct: 342 KLRTGIIP 349


>04_01_0221 + 2795975-2796836,2797001-2797517,2797967-2798516
          Length = 642

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +1

Query: 205 VHLEPEDQAVLWKNRI*LVKNSIVLFYLLLRTRHPSRYLHVDVPPA 342
           +HL  ++  + W+ R  +VK  I     L   RHP   LH D+ P+
Sbjct: 446 MHLYEKEALLSWRIRYKIVKGIISALVYLHHDRHP-YILHRDIKPS 490


>03_05_0508 - 25024826-25026439
          Length = 537

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 384 SLALTQGWASGQRLRRSPAVSSGTREMTRVANSS 485
           S A+   WA  + LRR  A+++ T E+ RV  ++
Sbjct: 326 SSAVAMEWAMAELLRRPDAMAAATDELDRVVGTA 359


>03_02_0361 - 7800879-7801484,7801614-7802513
          Length = 501

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 390 ALTQGWASGQRLRRSPAVSSGTREMTRVANS 482
           A+T  WA  Q L+  PA++    E+ RV  S
Sbjct: 311 AVTVEWAMAQLLQNPPAMAKAREELARVIGS 341


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,379,672
Number of Sequences: 37544
Number of extensions: 428211
Number of successful extensions: 1253
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1252
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)