Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11p16f
(626 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81037-5|CAB02752.1| 320|Caenorhabditis elegans Hypothetical pr... 86 2e-17
Z81550-4|CAB04477.1| 317|Caenorhabditis elegans Hypothetical pr... 82 4e-16
AC093703-1|AAL00863.3| 346|Caenorhabditis elegans Hypothetical ... 31 0.67
U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene... 31 0.89
U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprote... 31 0.89
U41546-5|AAC48222.2| 1022|Caenorhabditis elegans Sodium:neurotra... 29 2.7
Z81570-1|CAB04606.1| 749|Caenorhabditis elegans Hypothetical pr... 29 3.6
AY887910-1|AAX34422.1| 749|Caenorhabditis elegans anion transpo... 29 3.6
AF047656-13|AAC05105.1| 313|Caenorhabditis elegans Collagen pro... 28 6.3
AF026210-3|AAB71286.3| 382|Caenorhabditis elegans Hypothetical ... 28 6.3
Z81579-8|CAN86617.1| 930|Caenorhabditis elegans Hypothetical pr... 27 8.3
Z81579-7|CAB61019.1| 927|Caenorhabditis elegans Hypothetical pr... 27 8.3
AL132877-14|CAD92388.1| 439|Caenorhabditis elegans Hypothetical... 27 8.3
AL132877-13|CAC70110.4| 478|Caenorhabditis elegans Hypothetical... 27 8.3
AF016852-1|AAB94551.1| 927|Caenorhabditis elegans HMP-1 protein. 27 8.3
>Z81037-5|CAB02752.1| 320|Caenorhabditis elegans Hypothetical
protein C17E4.9 protein.
Length = 320
Score = 86.2 bits (204), Expect = 2e-17
Identities = 49/146 (33%), Positives = 82/146 (56%), Gaps = 4/146 (2%)
Frame = +2
Query: 200 KRFIWNPKTRQFCGRTGSSWSKIALFYFIFYSALAILVAICMWTFLQLLDARQPKWQLER 379
+ F++N K GRTG SW +I +FY IFY+ LA C+ F++ LD + P++ +
Sbjct: 30 REFLYNKKNGTVMGRTGKSWFQIIVFYIIFYAFLAAFWLTCLTIFMKTLDPKVPRFYGKG 89
Query: 380 SIIGTNPGLGFRPTPPE-VASSVIWYKGNDPGSQQFWVKKLSTFLAAYKRDG---KKAGA 547
+IIG NPG+G++P E S++I Y D S + +++++ T+L Y + ++ GA
Sbjct: 90 TIIGVNPGVGYQPWLKERPDSTLIKYNLRDQKSYKAYLEQMKTYLTKYDSNATETRECGA 149
Query: 548 GQNIHNCDFKLPPPAGKVCDVDISAW 625
G + N D + P A C D+S +
Sbjct: 150 GDS--NDDLEKNPDA-LPCRFDLSVF 172
>Z81550-4|CAB04477.1| 317|Caenorhabditis elegans Hypothetical
protein F55F3.3 protein.
Length = 317
Score = 81.8 bits (193), Expect = 4e-16
Identities = 42/122 (34%), Positives = 70/122 (57%), Gaps = 1/122 (0%)
Frame = +2
Query: 203 RFIWNPKTRQFCGRTGSSWSKIALFYFIFYSALAILVAICMWTFLQLLDARQPKWQLERS 382
+F++N GRTG+SW +I +FY IFY L+ C+ FL+ LD + P++ + +
Sbjct: 28 QFLYNKDKGTVLGRTGTSWCQITVFYIIFYIFLSAFFIGCLSIFLRTLDPKVPRFYGKGT 87
Query: 383 IIGTNPGLGFRPTPPE-VASSVIWYKGNDPGSQQFWVKKLSTFLAAYKRDGKKAGAGQNI 559
IIG NPG+G++P E S++I + D S + +VK+L +L+ YK + G +
Sbjct: 88 IIGVNPGVGYQPWLKENPDSTLIKFNLQDSKSWEPYVKQLDNYLSKYKNTNETRDCGASD 147
Query: 560 HN 565
+N
Sbjct: 148 NN 149
>AC093703-1|AAL00863.3| 346|Caenorhabditis elegans Hypothetical
protein Y20F4.3 protein.
Length = 346
Score = 31.1 bits (67), Expect = 0.67
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 416 PTPPEVASSVIWYKGNDPGSQQFWVKKLSTFLAAYKRDGKK 538
PTPP+++ + +WY G + ++S F YK++GKK
Sbjct: 30 PTPPDISPNDVWYHGELNEHDANHLLQVS-FAKNYKKNGKK 69
>U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene on
x protein 1 protein.
Length = 415
Score = 30.7 bits (66), Expect = 0.89
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -3
Query: 336 RNVHMQIATRMASAE*KIK*NNAIFDQLDPVLPQNCLVFGFQMNR 202
R + + AT ++ K+K I DQ++P++ Q+ L QMNR
Sbjct: 220 RKIEVNCATARVHSK-KVKPTGGILDQMNPLMAQSALAAQAQMNR 263
>U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprotein
protein.
Length = 415
Score = 30.7 bits (66), Expect = 0.89
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -3
Query: 336 RNVHMQIATRMASAE*KIK*NNAIFDQLDPVLPQNCLVFGFQMNR 202
R + + AT ++ K+K I DQ++P++ Q+ L QMNR
Sbjct: 220 RKIEVNCATARVHSK-KVKPTGGILDQMNPLMAQSALAAQAQMNR 263
>U41546-5|AAC48222.2| 1022|Caenorhabditis elegans
Sodium:neurotransmitter symporterfamily protein 12
protein.
Length = 1022
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 29 WTQSLRVLSRVTSTLNEFHRTSIKMTVKKRTSDL 130
W +LR+ + NE HR S +KKRT D+
Sbjct: 5 WKSALRLQIEALAKRNELHRKSSVDEIKKRTVDM 38
>Z81570-1|CAB04606.1| 749|Caenorhabditis elegans Hypothetical
protein K12G11.1 protein.
Length = 749
Score = 28.7 bits (61), Expect = 3.6
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +2
Query: 305 ILVAICMWTFLQLLDARQPKWQLERSIIGT 394
+++++C F +L + PKW L S+ GT
Sbjct: 522 LIISVCFALFTTILREQYPKWHLLASVKGT 551
>AY887910-1|AAX34422.1| 749|Caenorhabditis elegans anion
transporter SULP-4 protein.
Length = 749
Score = 28.7 bits (61), Expect = 3.6
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +2
Query: 305 ILVAICMWTFLQLLDARQPKWQLERSIIGT 394
+++++C F +L + PKW L S+ GT
Sbjct: 522 LIISVCFALFTTILREQYPKWHLLASVKGT 551
>AF047656-13|AAC05105.1| 313|Caenorhabditis elegans Collagen
protein 116 protein.
Length = 313
Score = 27.9 bits (59), Expect = 6.3
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = -2
Query: 379 PLELPFRLPSIQKLEERPHADSD*DGECGVEDKIEQCYF*PTRSCSSTELPGLRVP 212
PL + R + + ER A + DG VE I+QC P S PG+ P
Sbjct: 62 PLRILARRDASKMARERKQAGYEFDGGASVEAHIQQCNCAPATSHCPPGPPGIFGP 117
>AF026210-3|AAB71286.3| 382|Caenorhabditis elegans Hypothetical
protein F48A11.4 protein.
Length = 382
Score = 27.9 bits (59), Expect = 6.3
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = -2
Query: 460 SLVPDDTAGDLRRRWPEAQ--PWVSANDAPLELPFRLPSIQKLEERPHADSD*DGECGV 290
S DD+ G++ RRW E + +SA D L+ P L + + + DG GV
Sbjct: 4 SAAVDDSVGEIARRWLEIEKITSISATDCLLDRPCHLKHVAWKFNETYNEIWIDGVLGV 62
>Z81579-8|CAN86617.1| 930|Caenorhabditis elegans Hypothetical
protein R13H4.4b protein.
Length = 930
Score = 27.5 bits (58), Expect = 8.3
Identities = 18/71 (25%), Positives = 34/71 (47%)
Frame = +2
Query: 20 GSAWTQSLRVLSRVTSTLNEFHRTSIKMTVKKRTSDLTSLERFNMYYREKEPPLTRSQKV 199
GS ++LRV V + ++ + TVK+ L + +R + + E+ L Q+
Sbjct: 546 GSIRGRALRVCDVVDAEMDFLQNSEYTETVKQAVRILKT-QRVDQF-AERASALANRQEA 603
Query: 200 KRFIWNPKTRQ 232
W+PKT++
Sbjct: 604 HGLTWDPKTKE 614
>Z81579-7|CAB61019.1| 927|Caenorhabditis elegans Hypothetical
protein R13H4.4a protein.
Length = 927
Score = 27.5 bits (58), Expect = 8.3
Identities = 18/71 (25%), Positives = 34/71 (47%)
Frame = +2
Query: 20 GSAWTQSLRVLSRVTSTLNEFHRTSIKMTVKKRTSDLTSLERFNMYYREKEPPLTRSQKV 199
GS ++LRV V + ++ + TVK+ L + +R + + E+ L Q+
Sbjct: 546 GSIRGRALRVCDVVDAEMDFLQNSEYTETVKQAVRILKT-QRVDQF-AERASALANRQEA 603
Query: 200 KRFIWNPKTRQ 232
W+PKT++
Sbjct: 604 HGLTWDPKTKE 614
>AL132877-14|CAD92388.1| 439|Caenorhabditis elegans Hypothetical
protein Y105E8B.8b protein.
Length = 439
Score = 27.5 bits (58), Expect = 8.3
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 6/58 (10%)
Frame = +2
Query: 158 YREKEPPLTRSQKVKRF-IWNPKTRQFCGRTGSSWS-----KIALFYFIFYSALAILV 313
Y K PP + Q + W T F GR G+ WS ++ YFI+ L L+
Sbjct: 215 YNYKPPPPSLGQFGSQMGTWFRNTEMFAGRFGTKWSWEGPQRLRNVYFIYLLELRALL 272
>AL132877-13|CAC70110.4| 478|Caenorhabditis elegans Hypothetical
protein Y105E8B.8a protein.
Length = 478
Score = 27.5 bits (58), Expect = 8.3
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 6/58 (10%)
Frame = +2
Query: 158 YREKEPPLTRSQKVKRF-IWNPKTRQFCGRTGSSWS-----KIALFYFIFYSALAILV 313
Y K PP + Q + W T F GR G+ WS ++ YFI+ L L+
Sbjct: 254 YNYKPPPPSLGQFGSQMGTWFRNTEMFAGRFGTKWSWEGPQRLRNVYFIYLLELRALL 311
>AF016852-1|AAB94551.1| 927|Caenorhabditis elegans HMP-1 protein.
Length = 927
Score = 27.5 bits (58), Expect = 8.3
Identities = 18/71 (25%), Positives = 34/71 (47%)
Frame = +2
Query: 20 GSAWTQSLRVLSRVTSTLNEFHRTSIKMTVKKRTSDLTSLERFNMYYREKEPPLTRSQKV 199
GS ++LRV V + ++ + TVK+ L + +R + + E+ L Q+
Sbjct: 546 GSIRGRALRVCDVVDAEMDFLQNSEYTETVKQAVRILKT-QRVDQF-AERASALANRQEA 603
Query: 200 KRFIWNPKTRQ 232
W+PKT++
Sbjct: 604 HGLTWDPKTKE 614
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,193,254
Number of Sequences: 27780
Number of extensions: 323539
Number of successful extensions: 917
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -