Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11p15r
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces...    27   3.5  
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    26   6.1  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    26   6.1  

>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = -1

Query: 599 GINKCFLYLLQXE---FNPQRQQMTAYFLTPNVQDAIL*GRHH 480
           G+ K FLY +  E   FN +R++     + P+V+ A+L  R H
Sbjct: 346 GLIKDFLYAIGIEAKKFNNERKKRELEVIPPDVKSALLPARTH 388


>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = -1

Query: 398 NYFIISKSQVLKLMTLTKKLCRILKSNVFCVLIK*N 291
           +Y +  K+ +LKL    K+ C+IL   ++ ++ + N
Sbjct: 692 DYALAEKADLLKLSENRKEQCKILTQKLYTIVFRCN 727


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 105 IIYNYPIIFLVMSNFYCH 52
           +IY Y  +FLV  N YCH
Sbjct: 117 LIYTYSGLFLVAVNPYCH 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,506,336
Number of Sequences: 5004
Number of extensions: 45952
Number of successful extensions: 105
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)