Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11p15f
         (561 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce...    28   0.82 
SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr...    27   2.5  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   5.8  
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo...    25   7.6  
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po...    25   7.6  
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    25   7.6  

>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 28.3 bits (60), Expect = 0.82
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +2

Query: 353 SNIQATNIKKTVFQNQITVHYI*KLQCNNHNMVGRLLAYEMRTVTQISTYLHMLS-AKEM 529
           SN+    I   +  +  T H++   Q  +   VG + A+  +TV    +YL  LS  KE 
Sbjct: 131 SNLNLLGIPTGLRDSDATTHFVMNRQAGSSITVGTMYAFLKKTVIIDDSYLQYLSTVKES 190

Query: 530 V 532
           V
Sbjct: 191 V 191


>SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 454

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 18/46 (39%), Positives = 25/46 (54%)
 Frame = +2

Query: 311 FLRFTFTVHTSATRSNIQATNIKKTVFQNQITVHYI*KLQCNNHNM 448
           +LR TF+ HTS  RS+ QA    K ++QN   V    +  C N N+
Sbjct: 6   YLR-TFSTHTSYLRSSWQAILNYKYIYQNAEAV----QRNCINRNL 46


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -2

Query: 497 WIFASRSSFRTLKVYQPYCGYCTVVFKCN 411
           W++  R       VY  +  YC+ +F+CN
Sbjct: 719 WLWEIRHRGAFTSVYPCFIEYCSFLFECN 747


>SPBC244.02c |||U3 snoRNP-associated protein Utp6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 488

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 9/38 (23%), Positives = 17/38 (44%)
 Frame = +1

Query: 310 FFTLYIHSSHQCYQIKYTSYKYKKNRVSESNYRALHLK 423
           FF   + +  +C+ +    Y Y++N +   N    H K
Sbjct: 295 FFVSVLDALFECFDVPVVQYMYQENIIGICNEHFEHFK 332


>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 556

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = -3

Query: 253 FTSLASVGVCHLAARSHTRRRRLQNGISTSNDTTSEAHMLNTLTAVKYVQ 104
           + +L   G C++ A +   R  L +GIS+        +  +T+T++++VQ
Sbjct: 252 YLNLLDWGQCNMLAVALASRVYLWSGISSEVTVMHNFYPTDTVTSLRWVQ 301


>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 303 IPVFYALHSQFTPVLP 350
           IP +Y  HS FT VLP
Sbjct: 507 IPPYYEAHSAFTNVLP 522


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,149,595
Number of Sequences: 5004
Number of extensions: 42863
Number of successful extensions: 139
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)