Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11p15f
         (561 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0796 - 11251958-11251971,11252220-11252301,11252420-112525...    31   0.63 
11_06_0277 + 21843658-21845220,21846533-21846718,21847037-218471...    28   5.9  
01_01_0494 + 3651813-3652094,3652692-3652844,3653810-3653924,365...    28   5.9  
04_03_0852 + 20289439-20289721,20289858-20290642                       27   7.7  

>03_02_0796 -
           11251958-11251971,11252220-11252301,11252420-11252500,
           11252892-11253004,11253081-11253177,11253525-11253839,
           11253936-11253984,11254148-11254641,11254772-11254836,
           11255074-11255239,11257016-11257654
          Length = 704

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = -3

Query: 274 LRFSSNRFTSLASVGVCHLAARSHTRRRRLQNGISTSNDTTSEAH 140
           L  S+ RF+S ++ GV  LAA + + RR L   + +   +T E++
Sbjct: 21  LYLSTRRFSSSSAAGVAPLAAVAASARRLLSTSVDSGASSTGESY 65


>11_06_0277 +
           21843658-21845220,21846533-21846718,21847037-21847165,
           21847256-21847415,21847846-21847955,21848038-21848247,
           21848473-21848730,21848810-21848885,21849217-21849350,
           21849928-21850007,21850265-21850316
          Length = 985

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = -3

Query: 559 FKKIPQFTMHHLFCRQHVQICGYLRHGPHFVR*KSTNHIVVIAL*FLNVMHGNLILKHGF 380
           F++IP  T+HHL  R H  +C  L     + R  + NH   I L        +++    F
Sbjct: 727 FRQIPH-TLHHLSVRDHCVVC--LLCEIFYARDHNENHTAAILLGNARTAFSDILNDRNF 783

Query: 379 FY 374
            Y
Sbjct: 784 DY 785


>01_01_0494 +
           3651813-3652094,3652692-3652844,3653810-3653924,
           3654028-3654695
          Length = 405

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 440 HNMVGRLLAYEMRTVTQISTYLHMLSAKEMVHREL 544
           + M+ ++LA  +R+V  I TY+  LSA E   R L
Sbjct: 125 YRMICQVLASAVRSVWAIGTYMLPLSAAEFFRRRL 159


>04_03_0852 + 20289439-20289721,20289858-20290642
          Length = 355

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +1

Query: 484 DANIHISAHVVCKRDGAS 537
           DAN+HI+AH + KR+ A+
Sbjct: 131 DANLHINAHFIGKRNAAA 148


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,830,847
Number of Sequences: 37544
Number of extensions: 260534
Number of successful extensions: 761
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)