Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11p15f
         (561 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57881| Best HMM Match : FeoB_C (HMM E-Value=3.7)                    30   1.5  
SB_37854| Best HMM Match : MGC-24 (HMM E-Value=4.9)                    29   2.6  
SB_54597| Best HMM Match : zf-B_box (HMM E-Value=4e-17)                28   6.0  
SB_45743| Best HMM Match : Sushi (HMM E-Value=4.5e-10)                 27   7.9  
SB_1031| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.9  

>SB_57881| Best HMM Match : FeoB_C (HMM E-Value=3.7)
          Length = 162

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 87  SNATCVWTYFTAVSVLSMCASLVVSLLVEMPFCSL 191
           S+    W + +AVS   +CA  +VS+ +EMP   L
Sbjct: 117 SDVNISWNFLSAVSAAYLCA-FIVSVTIEMPMMQL 150


>SB_37854| Best HMM Match : MGC-24 (HMM E-Value=4.9)
          Length = 870

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 1   ESAGCARARWSCTPQRPGSCCSPLTRAS 84
           E     ++  +C P+RP SC  PLTR S
Sbjct: 152 EREPAVKSHVTCAPRRPRSCIYPLTRDS 179


>SB_54597| Best HMM Match : zf-B_box (HMM E-Value=4e-17)
          Length = 755

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 479 SSFRTLKVYQPYCGYCTVVFKCNAR*FDSETRFFLY 372
           +S +TL  Y     +C + FK + R + S +R FL+
Sbjct: 336 TSLKTLVFYYKNNAFCFIFFKVSDRGYQSSSRSFLF 371


>SB_45743| Best HMM Match : Sushi (HMM E-Value=4.5e-10)
          Length = 206

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 13  CARARWSCTPQRPGSCCSPLTRASARTLLAFGRISQP 123
           C   RWS  P R   C +PLT  + ++  AF +++ P
Sbjct: 43  CEDGRWSHDPPRCEDCVNPLTDTAIQS-KAFPKLNGP 78


>SB_1031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1933

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +2

Query: 197  SRVRPCREVTDADRS*GCKPVRRKPEKNRFLYIPINTGFL-RFTFTVHTS 343
            S+    R   D  RS G +P+R++P+      IP N  FL +    VH S
Sbjct: 1517 SQASTARSHKDGARSRGSQPLRQQPQPPSPSSIPTNMNFLQQIPLGVHPS 1566


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,681,948
Number of Sequences: 59808
Number of extensions: 328044
Number of successful extensions: 1281
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1281
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)