Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11p15f
         (561 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78059-2|CAH04726.2|  538|Caenorhabditis elegans Hypothetical pr...    31   0.75 
U88180-7|AAB42297.2|  789|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z83109-4|CAB05519.1|  705|Caenorhabditis elegans Hypothetical pr...    27   7.0  

>Z78059-2|CAH04726.2|  538|Caenorhabditis elegans Hypothetical
           protein C34B4.4 protein.
          Length = 538

 Score = 30.7 bits (66), Expect = 0.75
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -1

Query: 546 PSSRCTISFADNMCRYVDICVTVLISYAKSLPTILWLLHC 427
           PS  CT+ F+DNM  + D      IS  +   TIL ++ C
Sbjct: 238 PSHTCTLDFSDNMVCFCDTDYCNTISLLRGNITILPVIQC 277


>U88180-7|AAB42297.2|  789|Caenorhabditis elegans Hypothetical
           protein T27A3.2 protein.
          Length = 789

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 532 HHLFCRQHVQICGYLRHGPHFVR*KSTNHIV 440
           +H FCR+H +I G       FV+ +ST  I+
Sbjct: 50  YHAFCREHAEIYGTTSGNTLFVQFESTKKII 80


>Z83109-4|CAB05519.1|  705|Caenorhabditis elegans Hypothetical
           protein F44G3.7 protein.
          Length = 705

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 307 RFFTLYIHSSHQCYQIKYTSYKYKKNRVSESNYRALHLKTTV 432
           +F TL+ H     + I+Y+  K K+  VSE + R    + T+
Sbjct: 518 QFSTLFDHYHKAVFNIQYSDEKKKEENVSEPHKRKKKTERTI 559


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,228,770
Number of Sequences: 27780
Number of extensions: 248714
Number of successful extensions: 637
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)