Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11p14f
         (623 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    22   3.6  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   3.6  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   6.3  

>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 43  SLPVPGKVSAEELRLNCGVQV 105
           S P P + + EEL   CG+ V
Sbjct: 254 SNPYPSEEAKEELARKCGITV 274


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -1

Query: 116 NYICTCTPQF 87
           +YICTC P F
Sbjct: 44  SYICTCKPGF 53


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -3

Query: 264 LRCSPTHQSDLKIQQPSSSSPNLLYQ 187
           L  SP     +  Q   S SPN +YQ
Sbjct: 326 LTSSPPPPYQISAQPTPSQSPNQIYQ 351


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,615
Number of Sequences: 336
Number of extensions: 2445
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15979473
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)