Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11p13r
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.06c |||spermidine family transporter |Schizosaccharomyce...    30   0.30 
SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces pombe...    29   0.70 
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    27   2.8  
SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.9  
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb...    26   6.5  

>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 498

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 87  NYPYSIKIMYTAIGPTMELSKSFNSMSMSKTQNYI 191
           N+P SIK++ TA+      +  FNS +MS T +++
Sbjct: 49  NWPVSIKLLNTALYGLTTFAAQFNSTTMSPTTSHL 83


>SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 405

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +3

Query: 78  IKDNYPYSIKIMYTAIGPTMELSKSFNSMSMSKTQNYIDSI 200
           + +N PY+  + Y   GP  +L+   N+M    T+ Y+DSI
Sbjct: 321 LDENLPYNDYLQY--YGPDYKLNVLSNNMENHNTRQYLDSI 359


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -1

Query: 184  FCVFDIDIELNDFDNS 137
            +C+FDI +E N+F N+
Sbjct: 1821 YCMFDISLEFNEFSNN 1836


>SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 242 KAYSILIYL*ISDEIKMHRTLMYFSIYL 325
           KAY  +IY  I  E++M R  + + IY+
Sbjct: 144 KAYGWVIYKKIGPELRMRRRYLVYKIYV 171


>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -3

Query: 617 EHDLLFVLMYVLNQIFLIQIISNENSNMKYFRSLYMCVLKRK 492
           E  L FVL +V + ++    IS+   N   F +LY  +LKRK
Sbjct: 147 EISLRFVLHFV-SFLYNSSFISHIYGNYDVFSTLYTVILKRK 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,632,054
Number of Sequences: 5004
Number of extensions: 50094
Number of successful extensions: 122
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)