Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11p13r
         (745 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0468 - 29582506-29583147,29583313-29583600                       28   9.0  
01_01_0247 + 2023019-2023802,2023894-2023997                           28   9.0  

>01_06_0468 - 29582506-29583147,29583313-29583600
          Length = 309

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 127 DPQWNCQNHSIQCQCQKHKIILTQL 201
           D   +CQ  S+ C  Q+HKI++  L
Sbjct: 11  DDAGSCQKTSVACNRQRHKILIVNL 35


>01_01_0247 + 2023019-2023802,2023894-2023997
          Length = 295

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 247 GFWVIKINYCFYHNS 203
           GFW  +I + FYHNS
Sbjct: 84  GFWTYQIQHIFYHNS 98


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,752,408
Number of Sequences: 37544
Number of extensions: 221015
Number of successful extensions: 395
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)