Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11p13r
         (745 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006830-2|AAK68611.2|  293|Caenorhabditis elegans Serpentine re...    29   2.6  
Z54270-9|CAO82016.1|  787|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z54270-4|CAA91030.2| 1804|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z77136-1|CAB00880.1|  606|Caenorhabditis elegans Hypothetical pr...    29   4.6  
AF098996-6|AAC68709.1|  481|Caenorhabditis elegans Hypothetical ...    29   4.6  
Z77660-4|CAB01172.1|  501|Caenorhabditis elegans Hypothetical pr...    28   8.0  
U29157-1|AAA68423.4|  675|Caenorhabditis elegans Hypothetical pr...    28   8.0  

>AC006830-2|AAK68611.2|  293|Caenorhabditis elegans Serpentine
           receptor, class sx protein40 protein.
          Length = 293

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = -3

Query: 614 HDLLFVLMYVLNQIFLIQIISNENSNMKYFRSLYMCVL 501
           +  LF++ +  N IFLI I+ N+N    ++R + + ++
Sbjct: 18  YGFLFIIGFFFNLIFLIIILKNKNLKSMFYRLILVSIV 55


>Z54270-9|CAO82016.1|  787|Caenorhabditis elegans Hypothetical
           protein F11C1.5c protein.
          Length = 787

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/42 (26%), Positives = 24/42 (57%)
 Frame = -1

Query: 256 DTIGFWVIKINYCFYHNSLIESI*FCVFDIDIELNDFDNSIV 131
           DT+   +    YC   ++ +ES+ F + ++  + +DFD ++V
Sbjct: 669 DTLKRMIAHTQYCVSGDNTVESLQFAIKELAAKKDDFDETVV 710


>Z54270-4|CAA91030.2| 1804|Caenorhabditis elegans Hypothetical protein
            F11C1.5a protein.
          Length = 1804

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/42 (26%), Positives = 24/42 (57%)
 Frame = -1

Query: 256  DTIGFWVIKINYCFYHNSLIESI*FCVFDIDIELNDFDNSIV 131
            DT+   +    YC   ++ +ES+ F + ++  + +DFD ++V
Sbjct: 1686 DTLKRMIAHTQYCVSGDNTVESLQFAIKELAAKKDDFDETVV 1727


>Z77136-1|CAB00880.1|  606|Caenorhabditis elegans Hypothetical
           protein ZC376.1 protein.
          Length = 606

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +1

Query: 562 CIRKI*FSTYIKTNNKSCSVIMIIYSIIMFVEKKIYFKNTIFVNS 696
           C+    F+      NK+CSV+++++   +  E    FK  IF+N+
Sbjct: 104 CLYANVFTNQYCLQNKNCSVMIVVHGGRLVCESGSAFKPEIFINN 148


>AF098996-6|AAC68709.1|  481|Caenorhabditis elegans Hypothetical
           protein T11F1.2 protein.
          Length = 481

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = -3

Query: 587 VLNQIFLIQIISNENSNMKYFRSLYMCVLKRKQKKTTQLSE 465
           VL+ + +IQI+SN+N N  YF   +M V+  +  +T  + +
Sbjct: 407 VLDNVDVIQIVSNQNLNFVYFP--WMSVIITRYNRTVVIDK 445


>Z77660-4|CAB01172.1|  501|Caenorhabditis elegans Hypothetical
           protein F38H4.4 protein.
          Length = 501

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 711 WVIKRTVYENSVFKIYFFFHKHNYGVYNHNN 619
           WV+K     N  +K   F H H+Y  + HNN
Sbjct: 335 WVLKVVSVSNGDYKS--FLHIHHYNAWPHNN 363


>U29157-1|AAA68423.4|  675|Caenorhabditis elegans Hypothetical
           protein C34D10.2 protein.
          Length = 675

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
 Frame = +1

Query: 106 KLCTLLLDPQWNCQNHSIQC----QCQKHKIILTQLNCCDRNNN 225
           K   ++ DPQW+ Q+H + C    QC+K   +  Q   C   +N
Sbjct: 180 KTSFVIEDPQWHSQDHVLSCYKTEQCRKPARLCRQGYACPFYHN 223


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,143,929
Number of Sequences: 27780
Number of extensions: 270275
Number of successful extensions: 707
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)