Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11p13r
         (745 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   1.7  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    22   7.0  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   9.2  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              21   9.2  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   9.2  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 515 YMCVLKRKQKKTTQLSEKKN 456
           Y C +KRK++K  +  +K N
Sbjct: 261 YQCAVKRKEEKAQKEKDKPN 280


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 515 YMCVLKRKQKK 483
           Y C +KRK+KK
Sbjct: 58  YQCAVKRKEKK 68


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = -1

Query: 274 YSEINQDTIGFWVIKINYCFYHNS 203
           Y +   D I  WV  +  C Y+ S
Sbjct: 285 YEDSTYDDINQWVYPLTGCLYYFS 308


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 12/67 (17%), Positives = 34/67 (50%)
 Frame = +1

Query: 541 LFSFEIICIRKI*FSTYIKTNNKSCSVIMIIYSIIMFVEKKIYFKNTIFVNSTFDDPSKA 720
           L + + +C+++I  +  I  +     + M   ++++F+E  +   N +  N+ F++   +
Sbjct: 26  LHTVQSVCMKEIGTAQQIIDDINEGKINMDDENVLLFIECTMKKFNVVDENANFNEKISS 85

Query: 721 NIQIGVI 741
           +I   V+
Sbjct: 86  DIVRAVL 92


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = +3

Query: 42  FIDSICDQNYSNIKDNYPYSIKIMYTAIGPTM-ELSKSFNSMSMSKTQ 182
           ++D + D   + IKD YP +   ++   G T  E  K F      K Q
Sbjct: 151 WVDPVKDDKGNPIKDKYPNNWLSVFNGTGWTFHEGRKQFYFHQFYKQQ 198


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,262
Number of Sequences: 438
Number of extensions: 4310
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)