Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11p13f
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.03c |||spermidine family transporter |Schizosaccharomyces...    27   2.7  
SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|...    25   8.4  

>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 538

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 178 ISEFGYPLH*WTYILIDLSGSRLLIKRAVSAFSHLHNEKRFY 53
           +++ G+P     Y   DL   +LLI+     F ++ N +RFY
Sbjct: 38  VADEGFPAE--QYQSADLEKQQLLIEEGPGGFPYITNPERFY 77


>SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 539

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 541 FSNYFFCWSVWLSVG 585
           F NY F WS W+  G
Sbjct: 262 FLNYLFVWSPWVGFG 276


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,402,547
Number of Sequences: 5004
Number of extensions: 48473
Number of successful extensions: 94
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)