Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11p13f
         (596 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z29094-2|CAA82339.3|  590|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z32682-4|CAA83612.1|  218|Caenorhabditis elegans Hypothetical pr...    28   5.8  

>Z29094-2|CAA82339.3|  590|Caenorhabditis elegans Hypothetical
           protein C07A9.4 protein.
          Length = 590

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 30/83 (36%), Positives = 38/83 (45%)
 Frame = -2

Query: 259 TKNVVYPKQLITPRYDSFCSKVKL*LLISEFGYPLH*WTYILIDLSGSRLLIKRAVSAFS 80
           +K +   + LI P +  FC +V     IS F      W Y LI LS   +L+  AV  F+
Sbjct: 366 SKPITLLQCLICPVFLLFCIQV---CSISPFPNSPGLWMYGLI-LS---VLLTAAVLFFT 418

Query: 79  HLHNEKRFYT*FIVYNDHRMYIA 11
            LH E  FY   I Y    M IA
Sbjct: 419 ELHKEPPFYKSLISYAGFLMSIA 441


>Z32682-4|CAA83612.1|  218|Caenorhabditis elegans Hypothetical
           protein M04D8.4 protein.
          Length = 218

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 236 FGVNYIFGDFTGEPFKVYLQSISAFGKNIITKKKLQLCEWSKL 364
           F +N +FG   G P+K    S+  FG N+   K    CE ++L
Sbjct: 149 FFINSVFGFLIGNPWKGIAASLLHFGGNVFLVK--NQCEIAQL 189


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,971,343
Number of Sequences: 27780
Number of extensions: 254848
Number of successful extensions: 557
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)