Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11p13f
         (596 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    30   0.015
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    24   1.3  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    24   1.3  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    24   1.3  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   5.3  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   5.3  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 30.3 bits (65), Expect = 0.015
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 177 INNYNLTLLQKLSYRGVISCLG*TTFLVTSQESHLKYICKVY 302
           +N+ N+TL  K  Y    S +G  T + TS  +++ Y+ K Y
Sbjct: 624 LNSTNVTLSTKCPYPSYYSYIGVLTLVATSMPTYICYLGKAY 665


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 174 LINNYNLTLLQKLSYRGVISCL 239
           LI N  +T   K+S+RG  SCL
Sbjct: 238 LIKNQTITCPIKVSWRGNYSCL 259


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 174 LINNYNLTLLQKLSYRGVISCL 239
           LI N  +T   K+S+RG  SCL
Sbjct: 289 LIKNQTITCPIKVSWRGNYSCL 310


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 174 LINNYNLTLLQKLSYRGVISCL 239
           LI N  +T   K+S+RG  SCL
Sbjct: 238 LIKNQTITCPIKVSWRGNYSCL 259


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = +1

Query: 472 FDLSI*TFDIIIEIKNNM*IFLNFSNYFFCWSVWLSVGTAF 594
           F +S+  FDII+  +  M +  +F      W +   V + F
Sbjct: 95  FIVSLAIFDIIMAFEMPMLVISSFMERMIGWEIGCDVYSVF 135


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = +1

Query: 472 FDLSI*TFDIIIEIKNNM*IFLNFSNYFFCWSVWLSVGTAF 594
           F +S+  FDII+  +  M +  +F      W +   V + F
Sbjct: 95  FIVSLAIFDIIMAFEMPMLVISSFMERMIGWEIGCDVYSVF 135


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,889
Number of Sequences: 438
Number of extensions: 3543
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)