Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11p11r
         (737 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804     30   2.2  
08_01_0214 - 1710317-1710443,1710839-1711047,1711161-1711420,171...    28   6.7  

>06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804
          Length = 1209

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -1

Query: 734  YKPXLK*IXLCYCCAILVHLIIIHYITLMMFGVEFNY 624
            Y+P  + + LC C  I V L+++H++ L +  +E+ Y
Sbjct: 1169 YQPCFQCMMLCVCLLICVKLLLLHFLFLKI--IEWRY 1203


>08_01_0214 -
           1710317-1710443,1710839-1711047,1711161-1711420,
           1711442-1711534,1711745-1711872,1711958-1712151,
           1712288-1712385,1712548-1712658,1712782-1712950,
           1713109-1713181,1713311-1713507
          Length = 552

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = -2

Query: 421 EYNKIKSVNIYLVLKIMINIT-A*NFINLTSLKNINLDS 308
           E N + SVN+YL L  + +I+ A NF+++ S++ I   S
Sbjct: 122 ESNSLTSVNLYLFLGNLCSISQAANFVSVVSVEQIKRSS 160


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,556,656
Number of Sequences: 37544
Number of extensions: 223149
Number of successful extensions: 307
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)