Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11p11r
         (737 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79598-3|CAB01865.1|  680|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AJ242473-1|CAB43345.1|  680|Caenorhabditis elegans SYM-1 protein...    29   4.5  

>Z79598-3|CAB01865.1|  680|Caenorhabditis elegans Hypothetical
           protein C44H4.3 protein.
          Length = 680

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
 Frame = -2

Query: 367 NITA*NFINLTSLKNINLDSTKYFLFVNCAFKSLKIRLFSIMKIQKGYF-FQNKKVNTYS 191
           NIT   F+N+TSL ++NL   +        F ++K+ L +++        F +K V   +
Sbjct: 146 NITTKAFVNMTSLIDVNLGCNQICSMAADTFANVKMSLQNLILDNNCMTEFPSKAVRNMN 205

Query: 190 QLVT---KYNRM 164
            L+    KYN++
Sbjct: 206 NLIALHIKYNKI 217


>AJ242473-1|CAB43345.1|  680|Caenorhabditis elegans SYM-1 protein
           protein.
          Length = 680

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
 Frame = -2

Query: 367 NITA*NFINLTSLKNINLDSTKYFLFVNCAFKSLKIRLFSIMKIQKGYF-FQNKKVNTYS 191
           NIT   F+N+TSL ++NL   +        F ++K+ L +++        F +K V   +
Sbjct: 146 NITTKAFVNMTSLIDVNLGCNQICSMAADTFANVKMSLQNLILDNNCMTEFPSKAVRNMN 205

Query: 190 QLVT---KYNRM 164
            L+    KYN++
Sbjct: 206 NLIALHIKYNKI 217


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,967,405
Number of Sequences: 27780
Number of extensions: 270690
Number of successful extensions: 530
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)