Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11p11f
         (613 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    25   0.66 
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     24   1.2  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    24   1.2  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           24   1.2  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   1.5  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    23   1.5  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    23   1.5  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    23   1.5  
AJ969955-1|CAI94742.1|  160|Tribolium castaneum torso-like prote...    22   4.7  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   6.2  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   6.2  
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    21   8.2  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    21   8.2  

>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 24.6 bits (51), Expect = 0.66
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -2

Query: 423 FLNVKKSFIFSLLNGTS 373
           F +VKKS IFS+LN  S
Sbjct: 295 FFHVKKSTIFSILNTVS 311


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = +2

Query: 182 VENQPSVTTDSTRKQSQGNVHPSVLSGAD---SLTSSTNSFADART 310
           +  QP VT+ S   Q+  ++ P+V    D   S+ S  +   D+RT
Sbjct: 116 LNTQPPVTSSSNILQNLADITPNVTPNCDVKSSVCSPGSGHQDSRT 161


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = +2

Query: 182 VENQPSVTTDSTRKQSQGNVHPSVLSGAD---SLTSSTNSFADART 310
           +  QP VT+ S   Q+  ++ P+V    D   S+ S  +   D+RT
Sbjct: 116 LNTQPPVTSSSNILQNLADITPNVTPNCDVKSSVCSPGSGHQDSRT 161


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = +2

Query: 182 VENQPSVTTDSTRKQSQGNVHPSVLSGAD---SLTSSTNSFADART 310
           +  QP VT+ S   Q+  ++ P+V    D   S+ S  +   D+RT
Sbjct: 116 LNTQPPVTSSSNILQNLADITPNVTPNCDVKSSVCSPGSGHQDSRT 161


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +1

Query: 157 NRQFCGRCC*KSAQCHDRFYKKTVPGQCASFC 252
           N+ F   C      C D    + VPG+C + C
Sbjct: 703 NKCFTMEC--PQVTCPDNMKLEKVPGECCAIC 732



 Score = 21.8 bits (44), Expect = 4.7
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 182 QHLPQNCRLKVEAYRPETRDH 120
           +++PQ C    +AY P +R H
Sbjct: 743 RNVPQKCIFNGQAYFPGSRFH 763


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -2

Query: 522 NVISVKSQDPRYSPSSGNSKMVIHSCMAASTTPFLNVKKS 403
           N +SVK ++ R SP+S   K+ +       +    NVK S
Sbjct: 184 NSVSVKVENRRNSPNSCEKKIGLSKISPKESQDAANVKLS 223


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -2

Query: 522 NVISVKSQDPRYSPSSGNSKMVIHSCMAASTTPFLNVKKS 403
           N +SVK ++ R SP+S   K+ +       +    NVK S
Sbjct: 132 NSVSVKVENRRNSPNSCEKKIGLSKISPKESQDAANVKLS 171


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -2

Query: 522 NVISVKSQDPRYSPSSGNSKMVIHSCMAASTTPFLNVKKS 403
           N +SVK ++ R SP+S   K+ +       +    NVK S
Sbjct: 315 NSVSVKVENRRNSPNSCEKKIGLSKISPKESQDAANVKLS 354


>AJ969955-1|CAI94742.1|  160|Tribolium castaneum torso-like protein
           protein.
          Length = 160

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = -3

Query: 113 KYRSLYPNIYT--KALRAIFVFYNSLYLSTADK 21
           KY S +   Y    AL  +FVF  S+YL   ++
Sbjct: 89  KYGSHFIESYVTGNALYQVFVFRRSIYLQIKER 121


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = +2

Query: 155 STDN-SAVGVVENQPSVTTDSTRKQSQGNVHPSVLSGADSLTS 280
           S DN  + G + +  +   D     +Q    P  LSG  SLTS
Sbjct: 653 SDDNLGSCGSMGDAHTPPEDDAESLNQSISSPGALSGLSSLTS 695


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = +2

Query: 155 STDN-SAVGVVENQPSVTTDSTRKQSQGNVHPSVLSGADSLTS 280
           S DN  + G + +  +   D     +Q    P  LSG  SLTS
Sbjct: 545 SDDNLGSCGSMGDAHTPPEDDAESLNQSISSPGALSGLSSLTS 587


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/29 (24%), Positives = 16/29 (55%)
 Frame = +3

Query: 342 QQSLRRYTLGMMCHSIRRI*KTSSHSEKV 428
           QQ + RY    +C+ ++R  + +  +E +
Sbjct: 237 QQIIARYNFERLCNKLKRATRFNDFNEAI 265


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 92  NIYTKALRAIFVFYNSLYLST 30
           N Y   L+ +FVF   +YL T
Sbjct: 135 NDYVSLLQLVFVFCYFIYLFT 155


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,641
Number of Sequences: 336
Number of extensions: 3478
Number of successful extensions: 18
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15561709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)