Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11p11f
(613 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 29 0.53
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 27 1.6
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 2.1
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 27 2.1
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 27 2.1
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 27 2.1
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 27 2.1
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 27 2.1
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 27 2.1
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 27 2.1
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 27 2.1
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 27 2.1
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 27 2.1
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 27 2.1
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 27 2.1
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 27 2.1
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 27 2.8
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 26 3.7
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa... 26 3.7
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc... 26 3.7
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 4.9
SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ... 25 6.5
SPAC1D4.03c |aut12||autophagy associated protein Aut12|Schizosac... 25 6.5
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 25 8.6
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ... 25 8.6
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 29.1 bits (62), Expect = 0.53
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Frame = +2
Query: 98 TMSDILEDDLEFRGGT-LQLSTDNSAVGVVENQPSVTTDSTRKQSQGNVHPSVLSGADSL 274
T S +L T L ST ++ V+ + ++T+ S S SVL+ + +
Sbjct: 3193 TSSSVLNSSTPITSSTTLNTSTPITSSSVLNSSTAITSSSVLNSSTPITSSSVLNSSTPI 3252
Query: 275 TSST--NSFADARTQEQQNASGLSPTESQTV 361
TSST N+ + N+S +P S TV
Sbjct: 3253 TSSTVVNTSTPITSSSVLNSS--TPITSSTV 3281
Score = 28.3 bits (60), Expect = 0.93
Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 1/89 (1%)
Frame = +2
Query: 98 TMSDILEDDLEFRGGT-LQLSTDNSAVGVVENQPSVTTDSTRKQSQGNVHPSVLSGADSL 274
T S +L T L ST ++ V+ + +T+ S S SVL+ + ++
Sbjct: 961 TSSTVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSSVLNTSTPITSSSVLNSSTAI 1020
Query: 275 TSSTNSFADARTQEQQNASGLSPTESQTV 361
TSST + +P S TV
Sbjct: 1021 TSSTALNTSTPITSSSVLNSSTPITSSTV 1049
Score = 28.3 bits (60), Expect = 0.93
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Frame = +2
Query: 98 TMSDILEDDLEFRGGT-LQLSTDNSAVGVVENQPSVTTDSTRKQSQGNVHPSVLSGADSL 274
T S +L T L ST ++ V+ + ++T+ S S SVL+ + ++
Sbjct: 3061 TSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTAITSSSIVNSSTPITSSSVLNSSTAI 3120
Query: 275 TSST--NSFADARTQEQQNASGLSPTESQTV 361
TSS+ NS + N+S +P S TV
Sbjct: 3121 TSSSILNSSTPITSSSILNSS--TPITSSTV 3149
Score = 27.9 bits (59), Expect = 1.2
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Frame = +2
Query: 98 TMSDILEDDLEFRGGT-LQLSTDNSAVGVVENQPSVTTDSTRKQSQGNVHPSVLSGADSL 274
T S +L T L ST ++ V+ + +T+ S S SVL+ + +
Sbjct: 721 TSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSSILNSSTPITSSSVLNSSTPI 780
Query: 275 TSST--NSFADARTQEQQNASGLSPTESQTV 361
TSST N+ + N+S +P S TV
Sbjct: 781 TSSTVVNTSTPITSSSVLNSS--TPITSSTV 809
Score = 27.9 bits (59), Expect = 1.2
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Frame = +2
Query: 143 TLQLSTDNSAVGVVENQPSVTTDSTRKQSQGNVHPSVLSGADSLTSST--NSFADARTQE 316
TL ST ++ V+ + ++T+ + S SVL+ + ++TSS+ NS +
Sbjct: 3305 TLNTSTPITSSSVLNSSTAITSSTALNTSTPITSSSVLNSSTAITSSSILNSSTPVTSSS 3364
Query: 317 QQNASGLSPTESQTV 361
N+S +P S TV
Sbjct: 3365 VLNSS--TPITSSTV 3377
Score = 27.5 bits (58), Expect = 1.6
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +2
Query: 98 TMSDILEDDLEFRGGTL-QLSTDNSAVGVVENQPSVTTDSTRKQSQGNVHPSVLSGADSL 274
T S +L T+ ST ++ VV + +T+ +T S SVL+ + ++
Sbjct: 3265 TSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTTLNTSTPITSSSVLNSSTAI 3324
Query: 275 TSST 286
TSST
Sbjct: 3325 TSST 3328
Score = 27.1 bits (57), Expect = 2.1
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Frame = +2
Query: 98 TMSDILEDDLEFRGGTL-QLSTDNSAVGVVENQPSVTTDSTRKQSQGNVHPSVLSGADSL 274
T S +L T+ ST ++ VV + +T+ + S SVL+ + +
Sbjct: 1033 TSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPI 1092
Query: 275 TSST--NSFADARTQEQQNASGLSPTESQTV 361
TSST NS + N+S +P S TV
Sbjct: 1093 TSSTVLNSSTPITSSSVLNSS--TPITSSTV 1121
Score = 27.1 bits (57), Expect = 2.1
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 3/91 (3%)
Frame = +2
Query: 98 TMSDILEDDLEFRGGT-LQLSTDNSAVGVVENQPSVTTDSTRKQSQGNVHPSVLSGADSL 274
T S +L T L ST ++ V+ + +T+ + S SVL+ + +
Sbjct: 1285 TSSSVLNSSTPITSSTALNTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTPI 1344
Query: 275 TSST--NSFADARTQEQQNASGLSPTESQTV 361
TSST NS + N S +P S TV
Sbjct: 1345 TSSTVVNSSTPITSSTVVNTS--TPITSSTV 1373
Score = 27.1 bits (57), Expect = 2.1
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Frame = +2
Query: 146 LQLSTDNSAVGVVENQPSVTTDSTRKQSQGNVHPSVLSGADSLTSST--NSFADARTQEQ 319
L ST ++ VV S+T+ S S SVL+ + +TSST NS +
Sbjct: 2406 LNSSTPITSSTVVNTSTSITSSSVLNSSTPITSSSVLNSSTPITSSTVVNSSTPITSSSV 2465
Query: 320 QNASGLSPTESQT 358
N+S +P S T
Sbjct: 2466 LNSS--TPITSST 2476
Score = 26.6 bits (56), Expect = 2.8
Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 1/89 (1%)
Frame = +2
Query: 98 TMSDILEDDLEFRGGTL-QLSTDNSAVGVVENQPSVTTDSTRKQSQGNVHPSVLSGADSL 274
T S +L T+ ST ++ VV + +T+ + S SVL+ + +
Sbjct: 877 TSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPI 936
Query: 275 TSSTNSFADARTQEQQNASGLSPTESQTV 361
TSST + +P S TV
Sbjct: 937 TSSTGLNTSTPITSSSVLNSSTPITSSTV 965
Score = 26.6 bits (56), Expect = 2.8
Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 1/89 (1%)
Frame = +2
Query: 98 TMSDILEDDLEFRGGTL-QLSTDNSAVGVVENQPSVTTDSTRKQSQGNVHPSVLSGADSL 274
T S +L T+ ST ++ VV + +T+ + S SVL+ + +
Sbjct: 1549 TSSSVLNSSTPITSSTVVNTSTPITSSSVVNSSTPITSSTALNTSTPITSSSVLNSSTPI 1608
Query: 275 TSSTNSFADARTQEQQNASGLSPTESQTV 361
TSST + +P S TV
Sbjct: 1609 TSSTALNTSTPITSSSVLNSSTPITSSTV 1637
Score = 26.6 bits (56), Expect = 2.8
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = +2
Query: 98 TMSDILEDDLEFRGGT-LQLSTDNSAVGVVENQPSVTTDSTRKQSQGNVHPSVLSGADSL 274
T S +L T L ST ++ V+ + +T+ S S SVL+ + +
Sbjct: 1957 TSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSSVLNTSTPITSSSVLNSSTPI 2016
Query: 275 TSST 286
TSST
Sbjct: 2017 TSST 2020
Score = 26.6 bits (56), Expect = 2.8
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +2
Query: 143 TLQLSTDNSAVGVVENQPSVTTDSTRKQSQGNVHPSVLSGADSLTSST 286
TL ST ++ V+ + ++T+ S S SVL+ + +TSST
Sbjct: 3161 TLNTSTPITSSSVLNSSTAITSSSIVNSSTPITSSSVLNSSTPITSST 3208
Score = 26.2 bits (55), Expect = 3.7
Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 1/89 (1%)
Frame = +2
Query: 98 TMSDILEDDLEFRGGTL-QLSTDNSAVGVVENQPSVTTDSTRKQSQGNVHPSVLSGADSL 274
T S +L T+ ST ++ VV + +T+ + S SVL+ + +
Sbjct: 469 TSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPI 528
Query: 275 TSSTNSFADARTQEQQNASGLSPTESQTV 361
TSST + +P S TV
Sbjct: 529 TSSTALNTSTSITSSSVLNSSTPITSSTV 557
Score = 26.2 bits (55), Expect = 3.7
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +2
Query: 98 TMSDILEDDLEFRGGT-LQLSTDNSAVGVVENQPSVTTDSTRKQSQGNVHPSVLSGADSL 274
T S +L T L ST ++ V+ + +T+ + S SVL+ + ++
Sbjct: 649 TSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTAI 708
Query: 275 TSST 286
TSST
Sbjct: 709 TSST 712
Score = 26.2 bits (55), Expect = 3.7
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +2
Query: 98 TMSDILEDDLEFRGGT-LQLSTDNSAVGVVENQPSVTTDSTRKQSQGNVHPSVLSGADSL 274
T S +L T L ST ++ V+ + ++T+ + S SVL+ + +
Sbjct: 673 TSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTAITSSTALNTSTPITSSSVLNSSTPI 732
Query: 275 TSST 286
TSST
Sbjct: 733 TSST 736
Score = 26.2 bits (55), Expect = 3.7
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Frame = +2
Query: 98 TMSDILEDDLEFRGGT-LQLSTDNSAVGVVENQPSVTTDSTRKQSQGNVHPSVLSGADSL 274
T S +L T L ST ++ V+ + +T+ + S SVL+ + +
Sbjct: 697 TSSSVLNSSTAITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPI 756
Query: 275 TSST--NSFADARTQEQQNASGLSPTESQTV 361
TSS+ NS + N+S +P S TV
Sbjct: 757 TSSSILNSSTPITSSSVLNSS--TPITSSTV 785
Score = 26.2 bits (55), Expect = 3.7
Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 1/89 (1%)
Frame = +2
Query: 98 TMSDILEDDLEFRGGTL-QLSTDNSAVGVVENQPSVTTDSTRKQSQGNVHPSVLSGADSL 274
T S +L T+ ST ++ VV + +T+ + S SVL+ + +
Sbjct: 2581 TSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPI 2640
Query: 275 TSSTNSFADARTQEQQNASGLSPTESQTV 361
TSST + +P S TV
Sbjct: 2641 TSSTALNTSTSITSSSVLNSSTPITSSTV 2669
Score = 26.2 bits (55), Expect = 3.7
Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 1/89 (1%)
Frame = +2
Query: 98 TMSDILEDDLEFRGGTL-QLSTDNSAVGVVENQPSVTTDSTRKQSQGNVHPSVLSGADSL 274
T S +L T+ ST ++ VV + +T+ + S SVL+ + +
Sbjct: 2905 TSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPI 2964
Query: 275 TSSTNSFADARTQEQQNASGLSPTESQTV 361
TSST + +P S TV
Sbjct: 2965 TSSTALNTSTSITSSSVLNSSTPITSSTV 2993
Score = 26.2 bits (55), Expect = 3.7
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Frame = +2
Query: 98 TMSDILEDDLEFRGGT-LQLSTDNSAVGVVENQPSVTTDSTRKQSQGNVHPSVLSGADSL 274
T S IL + L ST ++ VV + +T+ +T S SVL+ + ++
Sbjct: 3121 TSSSILNSSTPITSSSILNSSTPITSSTVVNSSTPITSSTTLNTSTPITSSSVLNSSTAI 3180
Query: 275 TSST--NSFADARTQEQQNASGLSPTESQT 358
TSS+ NS + N+S +P S T
Sbjct: 3181 TSSSIVNSSTPITSSSVLNSS--TPITSST 3208
Score = 26.2 bits (55), Expect = 3.7
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Frame = +2
Query: 98 TMSDILEDDLEFRGGTL-QLSTDNSAVGVVENQPSVTTDSTRKQSQGNVHPSVLSGADSL 274
T S +L ++ ST ++ V+ + +T+ +T S SVL+ + ++
Sbjct: 3169 TSSSVLNSSTAITSSSIVNSSTPITSSSVLNSSTPITSSTTLNTSTPITSSSVLNSSTAI 3228
Query: 275 TSST--NSFADARTQEQQNASGLSPTESQTV 361
TSS+ NS + N+S +P S TV
Sbjct: 3229 TSSSVLNSSTPITSSSVLNSS--TPITSSTV 3257
Score = 25.8 bits (54), Expect = 4.9
Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 1/89 (1%)
Frame = +2
Query: 98 TMSDILEDDLEFRGGT-LQLSTDNSAVGVVENQPSVTTDSTRKQSQGNVHPSVLSGADSL 274
T S +L T L ST ++ V+ + +T+ + S SVL+ + +
Sbjct: 517 TSSSVLNSSTPITSSTALNTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTPI 576
Query: 275 TSSTNSFADARTQEQQNASGLSPTESQTV 361
TSST + +P S TV
Sbjct: 577 TSSTVVNTSTPITRYSVLNSSTPITSSTV 605
Score = 25.8 bits (54), Expect = 4.9
Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 1/89 (1%)
Frame = +2
Query: 98 TMSDILEDDLEFRGGTL-QLSTDNSAVGVVENQPSVTTDSTRKQSQGNVHPSVLSGADSL 274
T S +L T+ ST ++ VV + +T+ + S SVL+ + +
Sbjct: 1813 TSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPI 1872
Query: 275 TSSTNSFADARTQEQQNASGLSPTESQTV 361
TSST + +P S TV
Sbjct: 1873 TSSTALNTSTPITSSSVLNSSTPITSSTV 1901
Score = 25.8 bits (54), Expect = 4.9
Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 1/89 (1%)
Frame = +2
Query: 98 TMSDILEDDLEFRGGTL-QLSTDNSAVGVVENQPSVTTDSTRKQSQGNVHPSVLSGADSL 274
T S +L T+ ST ++ VV + +T+ + S SVL+ + +
Sbjct: 2005 TSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPI 2064
Query: 275 TSSTNSFADARTQEQQNASGLSPTESQTV 361
TSST + +P S TV
Sbjct: 2065 TSSTALNTSTPITSSSVLNSSTPITSSTV 2093
Score = 25.8 bits (54), Expect = 4.9
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Frame = +2
Query: 98 TMSDILEDDLEFRGGTL-QLSTDNSAVGVVENQPSVTTDSTRKQSQGNVHPSVLSGADSL 274
T S +L T+ ST ++ VV + +T+ + S SVL+ + +
Sbjct: 2677 TSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPI 2736
Query: 275 TSST--NSFADARTQEQQNASGLSPTESQTV 361
TSST N+ + N+S +P S TV
Sbjct: 2737 TSSTVVNTSTPITSSSVLNSS--TPITSSTV 2765
Score = 25.8 bits (54), Expect = 4.9
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 3/91 (3%)
Frame = +2
Query: 98 TMSDILEDDLEFRGGT-LQLSTDNSAVGVVENQPSVTTDSTRKQSQGNVHPSVLSGADSL 274
T S IL + L ST ++ VV + +T+ + S SVL+ + +
Sbjct: 3349 TSSSILNSSTPVTSSSVLNSSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPI 3408
Query: 275 TSST--NSFADARTQEQQNASGLSPTESQTV 361
TSST NS + N S +P S TV
Sbjct: 3409 TSSTVVNSSTPITSSTALNTS--TPITSSTV 3437
Score = 25.4 bits (53), Expect = 6.5
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = +2
Query: 98 TMSDILEDDLEFRGGT-LQLSTDNSAVGVVENQPSVTTDSTRKQSQGNVHPSVLSGADSL 274
T S +L T L ST ++ V+ + +T+ + S SVL+ + +
Sbjct: 2629 TSSSVLNSSTPITSSTALNTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTPI 2688
Query: 275 TSST 286
TSST
Sbjct: 2689 TSST 2692
Score = 25.4 bits (53), Expect = 6.5
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = +2
Query: 98 TMSDILEDDLEFRGGT-LQLSTDNSAVGVVENQPSVTTDSTRKQSQGNVHPSVLSGADSL 274
T S +L T L ST ++ V+ + +T+ + S SVL+ + +
Sbjct: 2857 TSSSVLNSSTPITSSTALNTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTPI 2916
Query: 275 TSST 286
TSST
Sbjct: 2917 TSST 2920
Score = 25.4 bits (53), Expect = 6.5
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = +2
Query: 98 TMSDILEDDLEFRGGT-LQLSTDNSAVGVVENQPSVTTDSTRKQSQGNVHPSVLSGADSL 274
T S +L T L ST ++ V+ + +T+ + S SVL+ + +
Sbjct: 2953 TSSSVLNSSTPITSSTALNTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTPI 3012
Query: 275 TSST 286
TSST
Sbjct: 3013 TSST 3016
Score = 25.0 bits (52), Expect = 8.6
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = +2
Query: 98 TMSDILEDDLEFRGGT-LQLSTDNSAVGVVENQPSVTTDSTRKQSQGNVHPSVLSGADSL 274
T S ++ T L ST ++ V+ + +T+ S S SVL+ + +
Sbjct: 1201 TSSTVVNSSTPITSSTVLNTSTPITSSSVLNSSTPITSSSILNSSTPITSSSVLNSSTPI 1260
Query: 275 TSST 286
TSST
Sbjct: 1261 TSST 1264
Score = 25.0 bits (52), Expect = 8.6
Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 1/89 (1%)
Frame = +2
Query: 98 TMSDILEDDLEFRGGT-LQLSTDNSAVGVVENQPSVTTDSTRKQSQGNVHPSVLSGADSL 274
T S IL + L ST ++ VV + +T+ + S SVL+ + +
Sbjct: 1237 TSSSILNSSTPITSSSVLNSSTPITSSTVVNSSTPITSSTALNTSIPITSSSVLNSSTPI 1296
Query: 275 TSSTNSFADARTQEQQNASGLSPTESQTV 361
TSST + +P S TV
Sbjct: 1297 TSSTALNTSTSITSSSVLNSSTPITSSTV 1325
Score = 25.0 bits (52), Expect = 8.6
Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 1/89 (1%)
Frame = +2
Query: 98 TMSDILEDDLEFRGGTL-QLSTDNSAVGVVENQPSVTTDSTRKQSQGNVHPSVLSGADSL 274
T S +L T+ ST ++ VV + +T+ + S SVL+ + +
Sbjct: 1405 TSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVVNTSTPITSSSVLNSSTPI 1464
Query: 275 TSSTNSFADARTQEQQNASGLSPTESQTV 361
TSST + +P S TV
Sbjct: 1465 TSSTVVNTSTPITSSTVVNSSTPITSSTV 1493
Score = 25.0 bits (52), Expect = 8.6
Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 1/89 (1%)
Frame = +2
Query: 98 TMSDILEDDLEFRGGT-LQLSTDNSAVGVVENQPSVTTDSTRKQSQGNVHPSVLSGADSL 274
T S ++ T L ST ++ V+ + +T+ + S SVL+ + +
Sbjct: 1741 TSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPI 1800
Query: 275 TSSTNSFADARTQEQQNASGLSPTESQTV 361
TSST + +P S TV
Sbjct: 1801 TSSTALNTSTPITSSSVLNSSTPITSSTV 1829
Score = 25.0 bits (52), Expect = 8.6
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = +2
Query: 98 TMSDILEDDLEFRGGTL-QLSTDNSAVGVVENQPSVTTDSTRKQSQGNVHPSVLSGADSL 274
T S +L T+ ST ++ VV + +T+ + S SVL+ + +
Sbjct: 2485 TSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNSSTPITSSSVLNSSTPI 2544
Query: 275 TSST 286
TSST
Sbjct: 2545 TSST 2548
Score = 25.0 bits (52), Expect = 8.6
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = +2
Query: 98 TMSDILEDDLEFRGGTL-QLSTDNSAVGVVENQPSVTTDSTRKQSQGNVHPSVLSGADSL 274
T S +L T+ ST ++ VV + +T+ + S SVL+ + +
Sbjct: 2785 TSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNSSTPITSSSVLNSSTPI 2844
Query: 275 TSST 286
TSST
Sbjct: 2845 TSST 2848
Score = 25.0 bits (52), Expect = 8.6
Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 1/89 (1%)
Frame = +2
Query: 98 TMSDILEDDLEFRGGT-LQLSTDNSAVGVVENQPSVTTDSTRKQSQGNVHPSVLSGADSL 274
T S ++ T L ST ++ V+ + +T+ + S SVL+ + +
Sbjct: 2809 TSSTVVNSSTPITSSTVLNSSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPI 2868
Query: 275 TSSTNSFADARTQEQQNASGLSPTESQTV 361
TSST + +P S TV
Sbjct: 2869 TSSTALNTSTSITSSSVLNSSTPITSSTV 2897
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 27.5 bits (58), Expect = 1.6
Identities = 20/102 (19%), Positives = 41/102 (40%)
Frame = +2
Query: 146 LQLSTDNSAVGVVENQPSVTTDSTRKQSQGNVHPSVLSGADSLTSSTNSFADARTQEQQN 325
L +T+NS V + P + +D N +++ + L N +A E++
Sbjct: 291 LNATTNNSVVLTPDTSPLLDSDEVVSDDDSNEQQTMMMKFNYLQHLRNKRDEAVHAEKRR 350
Query: 326 ASGLSPTESQTVYPRYDVPFNKENIKDFFTFRKGVVEAAIQE 451
+ + + RY+ +NK + ++ V AI+E
Sbjct: 351 LLDIRGSIHDRLVCRYENRYNKLHASEYNHHHDWAVRQAIRE 392
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.1 bits (57), Expect = 2.1
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 10/70 (14%)
Frame = +2
Query: 188 NQPSVTTDSTRKQSQGNVH-PSVLSGADSLTSSTN---------SFADARTQEQQNASGL 337
N PSV+T K + N H P V + ++S ++S+N + A R E+ A G+
Sbjct: 1191 NPPSVSTVQQSKPIESNTHTPEVKATSESPSASSNLEDRAARIKAEAQRRMNERLAALGI 1250
Query: 338 SPTESQTVYP 367
P + T P
Sbjct: 1251 KPRQKGTPSP 1260
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 152 VEAYRPETRDHLLKYRSLYPNIYTK 78
VE+Y + H +Y SL+PN +TK
Sbjct: 55 VESYISKLDQHFTEYPSLFPNEHTK 79
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 152 VEAYRPETRDHLLKYRSLYPNIYTK 78
VE+Y + H +Y SL+PN +TK
Sbjct: 55 VESYISKLDQHFTEYPSLFPNEHTK 79
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 152 VEAYRPETRDHLLKYRSLYPNIYTK 78
VE+Y + H +Y SL+PN +TK
Sbjct: 55 VESYISKLDQHFTEYPSLFPNEHTK 79
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 152 VEAYRPETRDHLLKYRSLYPNIYTK 78
VE+Y + H +Y SL+PN +TK
Sbjct: 55 VESYISKLDQHFTEYPSLFPNEHTK 79
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 152 VEAYRPETRDHLLKYRSLYPNIYTK 78
VE+Y + H +Y SL+PN +TK
Sbjct: 55 VESYISKLDQHFTEYPSLFPNEHTK 79
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 152 VEAYRPETRDHLLKYRSLYPNIYTK 78
VE+Y + H +Y SL+PN +TK
Sbjct: 55 VESYISKLDQHFTEYPSLFPNEHTK 79
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 27.1 bits (57), Expect = 2.1
Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 10/109 (9%)
Frame = +2
Query: 110 ILEDDLEFRGGTLQLSTDNSAVGVVENQPSVTTDSTRK-----QSQGNVHPSV-LSGADS 271
IL L ++ +L ST + G P V+ S R S G++ P+ +
Sbjct: 260 ILLSPLNYQNSSLNPSTPSPFGGSPVMHPPVSNLSPRTPAVPMSSDGHLAPAFDFLNENP 319
Query: 272 LTSSTNSFADAR--TQEQQNASGLSPTESQTVYPRYDVPFN--KENIKD 406
+ S S + + NAS ++P + ++ VPFN ENI D
Sbjct: 320 IWSKRFSISSIKYSAPSTSNASNIAPDSAPPASSQFSVPFNAAAENIND 368
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 152 VEAYRPETRDHLLKYRSLYPNIYTK 78
VE+Y + H +Y SL+PN +TK
Sbjct: 55 VESYISKLDQHFTEYPSLFPNEHTK 79
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 152 VEAYRPETRDHLLKYRSLYPNIYTK 78
VE+Y + H +Y SL+PN +TK
Sbjct: 55 VESYISKLDQHFTEYPSLFPNEHTK 79
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 152 VEAYRPETRDHLLKYRSLYPNIYTK 78
VE+Y + H +Y SL+PN +TK
Sbjct: 55 VESYISKLDQHFTEYPSLFPNEHTK 79
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 152 VEAYRPETRDHLLKYRSLYPNIYTK 78
VE+Y + H +Y SL+PN +TK
Sbjct: 55 VESYISKLDQHFTEYPSLFPNEHTK 79
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 27.1 bits (57), Expect = 2.1
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +2
Query: 137 GGTLQLSTDNSAVGVVENQPSVTTDSTRKQSQGNVHPSVLSGADS 271
GGTL +ST+N V + Q + + +++Q V P +L DS
Sbjct: 582 GGTLYVSTNNGYVLMFNFQNGQVIEHSLRRNQLGVAPIILKHFDS 626
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 152 VEAYRPETRDHLLKYRSLYPNIYTK 78
VE+Y + H +Y SL+PN +TK
Sbjct: 55 VESYISKLDQHFTEYPSLFPNEHTK 79
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 26.6 bits (56), Expect = 2.8
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = -2
Query: 600 IAIKSYLIVITSREVSSTILSFSLSHNVISVKSQDPRYSPSSGNSKMVIH-SCMAASTTP 424
I I + L + VSS+ SLS NV + +Q S SS NS + H S S+
Sbjct: 527 ITISTSLSSFPTTIVSSSFQYSSLSSNVTTTNAQSS--SLSSSNSSALTHISSSIVSSGS 584
Query: 423 FLNVKKSFIFSLLNGTS 373
+ S I S +N +S
Sbjct: 585 SSALSSSTIVSSINSSS 601
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -2
Query: 528 SHNVISVKSQDPRYSPSSGNSKMVIHSCMAASTTPF 421
S+++ S S Y PS NS +HS TT +
Sbjct: 312 SNSLYSNSSMQTPYLPSKSNSSTSLHSMYGVGTTAY 347
>SPAC3C7.06c |pit1||serine/threonine protein kinase
Pit1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 650
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -2
Query: 549 TILSFSLSHNVISVKSQDPRYSPSSGNSKMVIHS 448
+ILS SV S+ +YSP S N +HS
Sbjct: 525 SILSHEDKRENQSVNSESSKYSPRSSNHSPTLHS 558
>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 554
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +2
Query: 248 SVLSGADSLTSSTNSFADARTQEQQNASGLSPTESQ 355
+++ GA+ + ++ NSF DAR + QN L P+ S+
Sbjct: 484 TLMLGAEGIKNAINSFDDARKLDIQN-ERLPPSNSR 518
>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 841
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/51 (23%), Positives = 25/51 (49%)
Frame = -3
Query: 227 TVFL*NLS*HWADFQQHLPQNCRLKVEAYRPETRDHLLKYRSLYPNIYTKA 75
+ F ++S HW D + +C+ ++EA+ + +L + N+ KA
Sbjct: 335 STFTLSVSEHWEDLLRKATDSCQKELEAFEEISNLRVLAVENSLGNLIQKA 385
>SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 25.4 bits (53), Expect = 6.5
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +2
Query: 89 YLGTMSDILEDDLEFRGGTLQLSTDNSAVGVVENQPSV 202
+ G M+D +EDDL+ L D+ AV +VE PSV
Sbjct: 269 FAGEMADFIEDDLKSWYPEL---ADDFAVTLVEALPSV 303
>SPAC1D4.03c |aut12||autophagy associated protein
Aut12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 25.4 bits (53), Expect = 6.5
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = -2
Query: 576 VITSREVSSTIL-SFSLSHNVISVKSQDPRY 487
+I+S EVS L SFS NVI V S++P Y
Sbjct: 146 IISSFEVSKEELTSFSTFSNVIVVLSKNPLY 176
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 25.0 bits (52), Expect = 8.6
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +2
Query: 431 VEAAIQECITILLFPEDGEYL 493
++ A++EC+ + F D EYL
Sbjct: 52 LQVAVRECLFLFSFQNDNEYL 72
>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 879
Score = 25.0 bits (52), Expect = 8.6
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1
Query: 421 SECEEVFYILLIEWH 377
S CE ++LL+EWH
Sbjct: 349 SSCEYDHFLLLVEWH 363
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,674,766
Number of Sequences: 5004
Number of extensions: 59503
Number of successful extensions: 295
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 276
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -