Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11p11f
(613 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0659 - 24061318-24061575,24061664-24061918,24062001-240621... 36 0.033
12_02_0995 + 25104303-25104486,25105164-25105275,25106466-251065... 32 0.31
06_01_0508 - 3674787-3675140,3675257-3675566,3675672-3675806,367... 31 0.54
05_01_0435 - 3453312-3453527,3455227-3455360,3455544-3455738,345... 29 2.9
04_01_0034 - 401208-402923 29 2.9
02_04_0481 + 23284296-23284448,23284553-23284753,23284855-232879... 29 2.9
01_06_0718 - 31467530-31467892,31468017-31468178,31468268-314684... 29 3.8
11_06_0277 + 21843658-21845220,21846533-21846718,21847037-218471... 28 5.1
09_04_0161 - 15232074-15232139,15232299-15232406,15233417-152335... 28 6.7
06_03_1027 + 27000498-27000503,27001325-27002271,27002359-27002698 28 6.7
05_05_0230 - 23476919-23477372,23477656-23477695,23478578-234787... 27 8.9
03_01_0461 - 3543554-3543781,3544287-3544367,3544481-3544714,354... 27 8.9
>01_05_0659 - 24061318-24061575,24061664-24061918,24062001-24062172,
24062258-24062381,24062442-24062485,24063601-24063734,
24063822-24063905,24064100-24064390,24064713-24065045,
24065145-24065389,24065644-24065910,24065997-24066157,
24066253-24066569,24066665-24066946,24067024-24067325,
24067398-24067488,24067796-24067849,24067963-24068039,
24068159-24068318,24068653-24068737,24069029-24069238,
24069344-24069732
Length = 1444
Score = 35.5 bits (78), Expect = 0.033
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Frame = +2
Query: 185 ENQPSVTTDSTRKQSQGNVHPSVLSGADSLTSSTN-SFADARTQEQQNASGLSPTESQTV 361
++QPSV+ + K+ Q N++ +VL D++ SSTN + D + A PT+ V
Sbjct: 802 KSQPSVSEEEL-KEKQANINGNVLD-VDTMASSTNLAIVDNTETSSEIADNSQPTQRGMV 859
Query: 362 YPRYDVPFNKENIK 403
P + +NIK
Sbjct: 860 LPFAPLSLTFDNIK 873
>12_02_0995 + 25104303-25104486,25105164-25105275,25106466-25106554,
25106635-25106703,25106784-25106913,25107073-25107231,
25107364-25107736,25108070-25108182,25108429-25108624,
25108855-25109288,25109360-25109495,25109668-25111086
Length = 1137
Score = 32.3 bits (70), Expect = 0.31
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Frame = +2
Query: 152 LSTDNSAVGVVENQPSVTTDSTRKQSQGNVHPSVLS-GADSLTSSTNSFADARTQEQQNA 328
LS SAVG + N+PS + S +S N S GA S T T+S + R + Q+
Sbjct: 826 LSHSMSAVGRLGNEPSASAPSYIPRSYRNAMMERSSVGASSFTHQTSS--EQRVAQSQSM 883
Query: 329 SGLSPTESQTVYPRYDVPFNKENIKDFFTF 418
LSP+ + P + + ++ +++ TF
Sbjct: 884 FSLSPS---ILSPEHLIGNDRSSLRQGLTF 910
>06_01_0508 -
3674787-3675140,3675257-3675566,3675672-3675806,
3675891-3676100,3676193-3677359,3677397-3677587
Length = 788
Score = 31.5 bits (68), Expect = 0.54
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 164 NSAVGVVENQPSVTTDSTRKQSQGNVHP 247
N + GVVEN+P + TD Q G VHP
Sbjct: 349 NVSPGVVENEPGMKTDVLTTQGLGLVHP 376
>05_01_0435 -
3453312-3453527,3455227-3455360,3455544-3455738,
3455774-3455929,3456300-3456327,3456374-3456637,
3456728-3456868,3457482-3457602,3457886-3458049
Length = 472
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -2
Query: 399 IFSLLNGTSYRGYTV*DSVGDNPEAFCCSCVLASAKELVDDVKE 268
+ SL+ G + + ++VG P AFCC +LA K DD+ E
Sbjct: 418 VVSLVEGFAQKVSASLENVGWRPRAFCCLKLLAFGKLGNDDLCE 461
>04_01_0034 - 401208-402923
Length = 571
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Frame = +2
Query: 194 PSVTTDSTRKQSQGNVHPSVLSGADSLTSSTNSFAD---ARTQEQQNASGLSPTESQTVY 364
P+ +++S ++ + V P +S L + S D A T + A+ ++PT +
Sbjct: 116 PATSSNSKPREKKKRVIPESISLRQPLRDLSRSLPDTPRASTSSLRPAAAVAPTWDVVDH 175
Query: 365 PRYDVPFNKENIKD 406
PR + K+N+ D
Sbjct: 176 PRLSLQVLKDNVLD 189
>02_04_0481 + 23284296-23284448,23284553-23284753,23284855-23287971,
23288510-23289353,23289468-23290120,23290573-23290676,
23290898-23291000
Length = 1724
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 83 CIYLGTMSDILEDDLEFRGGTLQLSTDNSA-VGVVENQPSVTTD 211
CIY + + DDL G ++L+T NS+ V VE SV D
Sbjct: 1279 CIYCYQQIETISDDLLELGYAIELATGNSSIVSKVEGSSSVLKD 1322
>01_06_0718 -
31467530-31467892,31468017-31468178,31468268-31468415,
31468536-31468612,31468693-31468763,31468965-31469051,
31469138-31469602,31470357-31470659,31471151-31471202
Length = 575
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/69 (28%), Positives = 30/69 (43%)
Frame = +2
Query: 158 TDNSAVGVVENQPSVTTDSTRKQSQGNVHPSVLSGADSLTSSTNSFADARTQEQQNASGL 337
T+ AVG S D+TR S G+ P+ L+ + T+ +S A + +
Sbjct: 15 TEVGAVGAGHAGGSTAADATRDASSGDCSPAGLTPSGDATTG-DSPAGVTSSGESPTCDT 73
Query: 338 SPTESQTVY 364
SP E T Y
Sbjct: 74 SPGEPPTCY 82
>11_06_0277 +
21843658-21845220,21846533-21846718,21847037-21847165,
21847256-21847415,21847846-21847955,21848038-21848247,
21848473-21848730,21848810-21848885,21849217-21849350,
21849928-21850007,21850265-21850316
Length = 985
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = -2
Query: 399 IFSLLNGTSYRGYTV*DSVGD--NPEAFCCSCVLASAKELVDDVKE 268
+ SL+ G +++ + + VG P AFCC +LAS K DD+ E
Sbjct: 538 VVSLVEGFAHKVSALLEDVGWFWRPRAFCCLKLLASGKLGNDDLCE 583
>09_04_0161 -
15232074-15232139,15232299-15232406,15233417-15233506,
15233617-15233733,15234408-15234527,15234930-15236168
Length = 579
Score = 27.9 bits (59), Expect = 6.7
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Frame = +2
Query: 371 YDVPFNKENIKDFFTFRKGVVEAAIQECITILLFPEDGEYLGSWLLTE----ITLWDNEK 538
Y+V N N++D R+ +V+ QE + E +YL W E I+L+ +
Sbjct: 417 YNVLRNTSNLRDVVNMRRIMVQCIQQELKLHGILKEQIDYLEQWPALEKENSISLF-HAT 475
Query: 539 ERIVLLTSRLVMT--IKYDFIAMK 604
E + T RL +T K D +A+K
Sbjct: 476 EALKASTLRLPVTSGAKADVVALK 499
>06_03_1027 + 27000498-27000503,27001325-27002271,27002359-27002698
Length = 430
Score = 27.9 bits (59), Expect = 6.7
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Frame = +2
Query: 125 LEFRGGTLQLSTDNSAVGVVENQPSVTTDSTRKQSQG---NVHPSVLSGADSLTSSTNSF 295
+ F GG++ +S DNS+VG E++ + + +VH SV+ ++ + N
Sbjct: 61 MNFVGGSVAMSVDNSSVGSNESRTVMLKHPGLRDMPAPSYSVHNSVIHPNRAMAPTLNED 120
Query: 296 ADARTQEQQNASGLSPTESQTVYPRYDVPFNK 391
A AR + PTE + Y + + K
Sbjct: 121 ALARVLMDPS----HPTEILSNYEEWTIDLGK 148
>05_05_0230 -
23476919-23477372,23477656-23477695,23478578-23478700,
23479114-23479151,23479289-23479674,23479875-23481053,
23481805-23481928,23482733-23482779
Length = 796
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/57 (29%), Positives = 22/57 (38%)
Frame = +2
Query: 197 SVTTDSTRKQSQGNVHPSVLSGADSLTSSTNSFADARTQEQQNASGLSPTESQTVYP 367
S T TR + PS +ST+ A ART QN+ +PT P
Sbjct: 137 SSTPVKTRPSTPTKTRPSTPVRTRQTANSTSDSAAARTTSAQNSRPSTPTSRSRAMP 193
>03_01_0461 -
3543554-3543781,3544287-3544367,3544481-3544714,
3545335-3545415,3545456-3545538,3546445-3546604,
3546903-3547028
Length = 330
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -1
Query: 310 CSSICKRISR*CQRICTGENRRMHIAL 230
C +IC S C R+CT E R I L
Sbjct: 106 CYAICTEASTNCHRLCTLEKRVKEIVL 132
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,394,068
Number of Sequences: 37544
Number of extensions: 352774
Number of successful extensions: 903
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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