Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11p11f
(613 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33706| Best HMM Match : No HMM Matches (HMM E-Value=.) 74 1e-13
SB_17878| Best HMM Match : Drf_FH1 (HMM E-Value=0.022) 32 0.32
SB_2375| Best HMM Match : Pentapeptide_2 (HMM E-Value=2.7) 31 0.56
SB_16305| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.97
SB_28536| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_40832| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_780| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_46131| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_9554| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_39421| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_33021| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_11767| Best HMM Match : Kinesin (HMM E-Value=0) 28 5.2
SB_52871| Best HMM Match : Cyanate_lyase (HMM E-Value=7.8) 28 5.2
SB_27968| Best HMM Match : Calx-beta (HMM E-Value=0.0037) 28 6.9
SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05) 28 6.9
SB_38682| Best HMM Match : DAGAT (HMM E-Value=1.4e-16) 28 6.9
SB_8284| Best HMM Match : C1_3 (HMM E-Value=0.38) 28 6.9
SB_51468| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_34618| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_26113| Best HMM Match : CcmD (HMM E-Value=6.7) 27 9.1
SB_23226| Best HMM Match : Herpes_UL43 (HMM E-Value=1.9) 27 9.1
>SB_33706| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 969
Score = 73.7 bits (173), Expect = 1e-13
Identities = 30/72 (41%), Positives = 52/72 (72%)
Frame = +2
Query: 389 KENIKDFFTFRKGVVEAAIQECITILLFPEDGEYLGSWLLTEITLWDNEKERIVLLTSRL 568
+E K +F+ R+G E+A++EC IL +DG+ + +LLTEI WD+EKER+V++T +
Sbjct: 593 REQAKKYFSLREGQFESALEECKKILHPEKDGKIINGYLLTEIDHWDHEKERVVIITEKQ 652
Query: 569 VMTIKYDFIAMK 604
++ +KY+FI ++
Sbjct: 653 LVIVKYNFIGLR 664
>SB_17878| Best HMM Match : Drf_FH1 (HMM E-Value=0.022)
Length = 664
Score = 32.3 bits (70), Expect = 0.32
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +2
Query: 149 QLSTDNSAVGVVENQPSVTTDSTRKQSQGN 238
QL ++NS G VEN+ T D T+K+S+ N
Sbjct: 400 QLDSENSNTGNVENEKKGTKDKTKKKSKNN 429
>SB_2375| Best HMM Match : Pentapeptide_2 (HMM E-Value=2.7)
Length = 521
Score = 31.5 bits (68), Expect = 0.56
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = +2
Query: 158 TDNSAVGVVENQPSVTTDSTRKQSQGNVHPSVLSGADSLTSSTNSFADARTQEQQNASGL 337
+DNS+ G + S + +ST S + S S +D+ ++S NS+ D T +
Sbjct: 190 SDNSSSGNFNSDNSTSDNSTSDNSNSDNSTSDNSTSDN-SNSDNSYTDNSTSDNSKKDNS 248
Query: 338 SPTESQT 358
+P S T
Sbjct: 249 NPNNSNT 255
>SB_16305| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1122
Score = 30.7 bits (66), Expect = 0.97
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Frame = +2
Query: 194 PSVTTDSTRKQSQGNVHPSVLSGADS--LTSSTNSFADARTQEQQNASGLSPTESQTVYP 367
P ++T+S + NV P+ ++ AD+ + S+ + AD + + T
Sbjct: 193 PILSTNSDDDNVKENVIPADITVADNVGIASAVSKSADLNDDINDASKNQDEVTTSTNPK 252
Query: 368 RYDVPFNKENIKDFFTFRKGVVE 436
DVP+NKE+++ R+G V+
Sbjct: 253 NDDVPYNKEDVEMEDVDREGDVD 275
>SB_28536| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 467
Score = 29.9 bits (64), Expect = 1.7
Identities = 20/94 (21%), Positives = 37/94 (39%)
Frame = +2
Query: 116 EDDLEFRGGTLQLSTDNSAVGVVENQPSVTTDSTRKQSQGNVHPSVLSGADSLTSSTNSF 295
EDD++ G + + +VT T + S G++ V S + + S +
Sbjct: 275 EDDVKLWEGLFGSLLPSLPCFATNSTGNVTALPTSQSSYGSIEWPVGSASPTSLSEDGNS 334
Query: 296 ADARTQEQQNASGLSPTESQTVYPRYDVPFNKEN 397
+ E + + PT +T YD+ FN +
Sbjct: 335 TPSEDTECSHGNCFEPTNVETETDEYDIEFNNND 368
>SB_40832| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1496
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 308 TQEQQNASGLSPTESQTVYPR-YDVPFNKENIKD 406
T+ Q SG + +QTV P YDVP KEN+ D
Sbjct: 1380 TRFVQLKSGFTQIRAQTVEPGFYDVPREKENVSD 1413
>SB_780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 29.5 bits (63), Expect = 2.2
Identities = 32/97 (32%), Positives = 39/97 (40%), Gaps = 11/97 (11%)
Frame = +2
Query: 113 LEDDLEFRGGTLQLSTDNSAVGVVENQPSVTT---------DSTRKQSQGNVHPSVLS-- 259
L D F +L+LS D+ G QPSV + RK + PS S
Sbjct: 11 LNRDESFEDRSLRLSCDDD--GDESRQPSVLARGVRTATEIERARKSTGVRAEPSENSED 68
Query: 260 GADSLTSSTNSFADARTQEQQNASGLSPTESQTVYPR 370
G TSSTNS A TQ Q S +P T P+
Sbjct: 69 GDFPETSSTNSEATGGTQNQPQLSTQAPMSQATGIPQ 105
>SB_46131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 899
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 475 GGWRIPRVLAFDRNNIMGQRKGENRTAYFTTSY 573
GG+R PRVL+ ++I+G + ++ A TT Y
Sbjct: 486 GGYRYPRVLSHLASDILGYPQVSSQLASITTGY 518
>SB_9554| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 318
Score = 29.1 bits (62), Expect = 3.0
Identities = 31/97 (31%), Positives = 39/97 (40%), Gaps = 11/97 (11%)
Frame = +2
Query: 113 LEDDLEFRGGTLQLSTDNSAVGVVENQPSVTT---------DSTRKQSQGNVHPSVLS-- 259
L D F +L+LS D+ G QPSV + RK ++ PS S
Sbjct: 11 LNRDESFEDRSLRLSCDDD--GDESRQPSVLARGVRTATEIERARKSTEVRAEPSENSED 68
Query: 260 GADSLTSSTNSFADARTQEQQNASGLSPTESQTVYPR 370
G TSSTNS A TQ Q +P T P+
Sbjct: 69 GNFPETSSTNSEATGGTQNQPQLPTQAPMSQATGIPQ 105
>SB_39421| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1810
Score = 28.7 bits (61), Expect = 3.9
Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 7/77 (9%)
Frame = +2
Query: 185 ENQPSVTTDSTRKQSQGNVHPSVLSGADSLTSSTNSFADARTQEQ-------QNASGLSP 343
E +PS TT ++ ++ S+ G +SS S A + Q SG S
Sbjct: 601 EEEPSDTTSGMSTGARSDIRRSLDEGESGASSSPPSSASGQQPSSAQSPGRFQIVSGTSA 660
Query: 344 TESQTVYPRYDVPFNKE 394
S T P Y+ PF E
Sbjct: 661 DNSSTRKPGYEYPFPLE 677
>SB_33021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 28.7 bits (61), Expect = 3.9
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = +1
Query: 145 ASTFNRQFCGRCC 183
AS F+RQ+CG+CC
Sbjct: 133 ASHFDRQYCGKCC 145
>SB_11767| Best HMM Match : Kinesin (HMM E-Value=0)
Length = 1230
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -3
Query: 110 YRSLYPNIYTKALRAIF-VFYNSLYLSTADKN 18
YR+LY NIY R I+ Y+ +Y + KN
Sbjct: 100 YRALYRNIYRALYRNIYRALYSKIYFALYSKN 131
>SB_52871| Best HMM Match : Cyanate_lyase (HMM E-Value=7.8)
Length = 346
Score = 28.3 bits (60), Expect = 5.2
Identities = 31/97 (31%), Positives = 39/97 (40%), Gaps = 11/97 (11%)
Frame = +2
Query: 113 LEDDLEFRGGTLQLSTDNSAVGVVENQPSVTT---------DSTRKQSQGNVHPSVLS-- 259
L D F +L+LS D+ G QPSV + RK ++ PS S
Sbjct: 11 LNRDESFEDRSLRLSCDDD--GDESRQPSVLARGVRTATEIERGRKSTEVRAEPSENSED 68
Query: 260 GADSLTSSTNSFADARTQEQQNASGLSPTESQTVYPR 370
G TSSTNS A TQ Q +P T P+
Sbjct: 69 GNFPETSSTNSEATGGTQNQPQLPTQAPMSQATGIPQ 105
>SB_27968| Best HMM Match : Calx-beta (HMM E-Value=0.0037)
Length = 260
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = -2
Query: 552 STILSFSLSHNVISVKSQDPRYSPSSGNSKMVIHSCM 442
STI + LS+ V+++K +D S + K ++SC+
Sbjct: 143 STIATIVLSNQVVTIKDEDRELCKSRISKKTCMNSCL 179
>SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)
Length = 2200
Score = 27.9 bits (59), Expect = 6.9
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -3
Query: 158 LKVEAYRPETRDHLLKYRSLYPN 90
+K+ AY + R+HL+K R+ PN
Sbjct: 1331 MKIRAYMTKVREHLMKLRADLPN 1353
>SB_38682| Best HMM Match : DAGAT (HMM E-Value=1.4e-16)
Length = 807
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = -2
Query: 612 SNCFIAIKSYLIVITSREVSSTILSFSLSHNVISVKSQDPRYSPSSGNSKMVIHSCMAAS 433
S F+ I + + V + ++ +L+ ISV + RY+ S+GN + C+ S
Sbjct: 624 SRLFLGINTRIAVHSLIFMAPVFREIALAAGFISVARESCRYALSNGNPGQSVVICVGGS 683
Query: 432 T 430
T
Sbjct: 684 T 684
>SB_8284| Best HMM Match : C1_3 (HMM E-Value=0.38)
Length = 523
Score = 27.9 bits (59), Expect = 6.9
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 362 YPRYDVPFNKENIKDFFTFRKG 427
YPRY PFN+ ++ F KG
Sbjct: 54 YPRYSDPFNRSFVRPKMAFNKG 75
Score = 27.9 bits (59), Expect = 6.9
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 362 YPRYDVPFNKENIKDFFTFRKG 427
YPRY PFN+ ++ F KG
Sbjct: 100 YPRYSDPFNRSFVRPKMAFNKG 121
>SB_51468| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1626
Score = 27.5 bits (58), Expect = 9.1
Identities = 21/72 (29%), Positives = 32/72 (44%)
Frame = +2
Query: 167 SAVGVVENQPSVTTDSTRKQSQGNVHPSVLSGADSLTSSTNSFADARTQEQQNASGLSPT 346
S +GV PS TT + S V+P+ +S S+ SST+ ++ + Q AS P
Sbjct: 357 SVLGVTS--PSTTTST----STAAVYPTAVSSLVSVASSTHMIQPSQAKTIQTASKTPPV 410
Query: 347 ESQTVYPRYDVP 382
Y +P
Sbjct: 411 WVPLSQLNYQIP 422
>SB_34618| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 351
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -2
Query: 546 ILSFSLSHNVISVKSQDPRYSPSSGNSKMVIHS 448
+ ++ ++ NV + P Y PSSGN+K+ + S
Sbjct: 113 LTAWFIAGNVWIYSNYQPNYDPSSGNAKLPLDS 145
>SB_26113| Best HMM Match : CcmD (HMM E-Value=6.7)
Length = 198
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/63 (25%), Positives = 33/63 (52%)
Frame = -1
Query: 502 PGP*VFSILRKQQNGNTFLYGCFYNTFSECEEVFYILLIEWHIIPRVYRLRLCWR*S*GI 323
P + + +R +GN+ +Y C ++ +C + + L++ H I +Y L+ W S +
Sbjct: 6 PADFILTTVRITGSGNSKMYRCLISSSIKCFVMKFTELVKNHQI--IYHLKFQWFRSEVL 63
Query: 322 LLF 314
L+F
Sbjct: 64 LVF 66
>SB_23226| Best HMM Match : Herpes_UL43 (HMM E-Value=1.9)
Length = 749
Score = 27.5 bits (58), Expect = 9.1
Identities = 21/72 (29%), Positives = 32/72 (44%)
Frame = +2
Query: 167 SAVGVVENQPSVTTDSTRKQSQGNVHPSVLSGADSLTSSTNSFADARTQEQQNASGLSPT 346
S +GV PS TT + S V+P+ +S S+ SST+ ++ + Q AS P
Sbjct: 337 SVLGVTS--PSTTTST----STAAVYPTAVSSLVSVASSTHMIQPSQAKTIQTASKTPPV 390
Query: 347 ESQTVYPRYDVP 382
Y +P
Sbjct: 391 WVPLSQLNYQIP 402
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,719,659
Number of Sequences: 59808
Number of extensions: 453305
Number of successful extensions: 1240
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1239
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -