Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11p11f
(613 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41033-6|AAA82378.1| 859|Caenorhabditis elegans Hypothetical pr... 31 0.65
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ... 31 0.65
Z36237-1|CAA85271.2| 619|Caenorhabditis elegans Hypothetical pr... 29 2.0
AY204167-1|AAO39171.1| 619|Caenorhabditis elegans nuclear recep... 29 2.0
AF083224-1|AAD03682.1| 619|Caenorhabditis elegans nuclear recep... 29 2.0
Z80789-1|CAB02551.1| 708|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z92833-3|CAB07378.1| 506|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z70780-2|CAA94821.1| 468|Caenorhabditis elegans Hypothetical pr... 29 3.5
U51163-1|AAA96319.1| 506|Caenorhabditis elegans fork head/HNF-3... 29 3.5
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ... 29 3.5
AF016448-1|AAB65956.2| 477|Caenorhabditis elegans Temporarily a... 29 3.5
U41029-3|AAF99952.2| 886|Caenorhabditis elegans Hypothetical pr... 28 6.0
Z81564-6|CAB04572.1| 678|Caenorhabditis elegans Hypothetical pr... 27 8.0
AF273770-1|AAG15119.1| 469|Caenorhabditis elegans nuclear recep... 27 8.0
AF047659-1|AAC04422.1| 146|Caenorhabditis elegans Hypothetical ... 27 8.0
AF016853-1|AAB94552.1| 678|Caenorhabditis elegans HMP-2 protein. 27 8.0
>U41033-6|AAA82378.1| 859|Caenorhabditis elegans Hypothetical
protein K09E3.7 protein.
Length = 859
Score = 31.1 bits (67), Expect = 0.65
Identities = 23/76 (30%), Positives = 36/76 (47%)
Frame = -2
Query: 594 IKSYLIVITSREVSSTILSFSLSHNVISVKSQDPRYSPSSGNSKMVIHSCMAASTTPFLN 415
I S++ I S + I+SF H IS + P S S M ++AST
Sbjct: 555 IPSFIPTIPSTTLVPRIMSFPNIHGTISPGNNAPINSRVSSLRAMEQQRTVSAST----- 609
Query: 414 VKKSFIFSLLNGTSYR 367
+K+ +F ++NG SY+
Sbjct: 610 LKQEAVFEMVNGLSYQ 625
>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
protein Y53C10A.10 protein.
Length = 1582
Score = 31.1 bits (67), Expect = 0.65
Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Frame = +2
Query: 176 GVVENQPSVTTDSTRKQSQGNVHPSVLSGADSLTSST---NSFADARTQEQQNASGL-SP 343
GVV + + D + S PS LS DSLT++T ++ A T E AS + SP
Sbjct: 442 GVVIRNGTDSKDESSGSSLSKSTPSFLSPTDSLTATTPPGSTTQAASTTESAMASSIESP 501
Query: 344 TESQTV 361
T S TV
Sbjct: 502 TASVTV 507
>Z36237-1|CAA85271.2| 619|Caenorhabditis elegans Hypothetical
protein C48D5.1 protein.
Length = 619
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/47 (25%), Positives = 27/47 (57%)
Frame = -2
Query: 561 EVSSTILSFSLSHNVISVKSQDPRYSPSSGNSKMVIHSCMAASTTPF 421
E+ T+ +F + HN + + + P Y+P + ++ + + M + T+PF
Sbjct: 147 ELDPTMQAFQMPHNDLFLATAAPHYNPFALSNDFMPNPLMPSFTSPF 193
>AY204167-1|AAO39171.1| 619|Caenorhabditis elegans nuclear receptor
NHR-6 protein.
Length = 619
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/47 (25%), Positives = 27/47 (57%)
Frame = -2
Query: 561 EVSSTILSFSLSHNVISVKSQDPRYSPSSGNSKMVIHSCMAASTTPF 421
E+ T+ +F + HN + + + P Y+P + ++ + + M + T+PF
Sbjct: 147 ELDPTMQAFQMPHNDLFLATAAPHYNPFALSNDFMPNPLMPSFTSPF 193
>AF083224-1|AAD03682.1| 619|Caenorhabditis elegans nuclear receptor
NHR-6 protein.
Length = 619
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/47 (25%), Positives = 27/47 (57%)
Frame = -2
Query: 561 EVSSTILSFSLSHNVISVKSQDPRYSPSSGNSKMVIHSCMAASTTPF 421
E+ T+ +F + HN + + + P Y+P + ++ + + M + T+PF
Sbjct: 147 ELDPTMQAFQMPHNDLFLATAAPHYNPFALSNDFMPNPLMPSFTSPF 193
>Z80789-1|CAB02551.1| 708|Caenorhabditis elegans Hypothetical
protein F48C11.2 protein.
Length = 708
Score = 29.1 bits (62), Expect = 2.6
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = -1
Query: 328 GILLFLCSSICKRISR*CQRICTGENRRM--HIALGLFSCRICRD 200
G+LLFLC IC C CT R H + +F C I RD
Sbjct: 277 GLLLFLCCCICHCCMHACM-FCTPGKREKEDHEMVLIFYCFIIRD 320
>Z92833-3|CAB07378.1| 506|Caenorhabditis elegans Hypothetical
protein F38A6.1a protein.
Length = 506
Score = 28.7 bits (61), Expect = 3.5
Identities = 24/86 (27%), Positives = 36/86 (41%)
Frame = +2
Query: 116 EDDLEFRGGTLQLSTDNSAVGVVENQPSVTTDSTRKQSQGNVHPSVLSGADSLTSSTNSF 295
E D E T STD+ EN+ + T+ RK+ Q H + +G S TS T +
Sbjct: 23 EPDSEAEPATTTNSTDSEDSVEQENKKLLETEKNRKREQ--KHKMLPNGTTSGTSDTGNQ 80
Query: 296 ADARTQEQQNASGLSPTESQTVYPRY 373
A T ++ + +Q P Y
Sbjct: 81 VPA-TSSAASSVDYTAMNAQDYLPTY 105
>Z70780-2|CAA94821.1| 468|Caenorhabditis elegans Hypothetical
protein F46B6.4 protein.
Length = 468
Score = 28.7 bits (61), Expect = 3.5
Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 5/101 (4%)
Frame = +2
Query: 170 AVGVVENQPSVTT-DSTRKQSQGNVHPSVLSGADSLTSSTNSFADAR-TQEQQNASGLSP 343
AV +V+N P++ DS N + + +L AR T N LSP
Sbjct: 64 AVALVDNLPNMNAVDSLIMPVDYNTKRKAVWASGNLEKLIARREAARATALMVNVDALSP 123
Query: 344 TESQTVYPRYDVP-FNKENI--KDFFTFRKGVVEAAIQECI 457
++ Q +Y ++VP F++ NI F F K EA IQ I
Sbjct: 124 SQQQELYRIFEVPIFDRYNIVLATFKQFAK-TEEARIQIAI 163
>U51163-1|AAA96319.1| 506|Caenorhabditis elegans fork
head/HNF-3-like protein protein.
Length = 506
Score = 28.7 bits (61), Expect = 3.5
Identities = 24/86 (27%), Positives = 36/86 (41%)
Frame = +2
Query: 116 EDDLEFRGGTLQLSTDNSAVGVVENQPSVTTDSTRKQSQGNVHPSVLSGADSLTSSTNSF 295
E D E T STD+ EN+ + T+ RK+ Q H + +G S TS T +
Sbjct: 23 EPDSEAEPATTTNSTDSEDSVEQENKKLLETEKNRKREQ--KHKMLPNGTTSGTSDTGNQ 80
Query: 296 ADARTQEQQNASGLSPTESQTVYPRY 373
A T ++ + +Q P Y
Sbjct: 81 VPA-TSSAASSVDYTAMNAQDYLPTY 105
>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
protein H02F09.3 protein.
Length = 1275
Score = 28.7 bits (61), Expect = 3.5
Identities = 20/69 (28%), Positives = 30/69 (43%)
Frame = +2
Query: 152 LSTDNSAVGVVENQPSVTTDSTRKQSQGNVHPSVLSGADSLTSSTNSFADARTQEQQNAS 331
LST + + G + S T ST S S +SGA +++ ST S + T ++
Sbjct: 800 LSTISGSTGSTVSGSSDMTVSTGSTSSPGSTESTVSGASTMSPSTGSSVETSTSGSSVST 859
Query: 332 GLSPTESQT 358
T S T
Sbjct: 860 VSQSTSSST 868
>AF016448-1|AAB65956.2| 477|Caenorhabditis elegans Temporarily
assigned gene nameprotein 196 protein.
Length = 477
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = +2
Query: 353 QTVYPRYDVPFNKENIKDFFTFR-KGVVEAAIQE--CITILLFPEDGEYLGSWLLTEITL 523
Q + ++DV N+E++ + F +R KG V + C + F G G+W + + L
Sbjct: 249 QANFEKHDVTINEEDLPESFDWREKGAVTQVKNQGNCGSCWAFSTTGNVEGAWFIAKNKL 308
Query: 524 WDNEKERIV 550
++ +V
Sbjct: 309 VSLSEQELV 317
>U41029-3|AAF99952.2| 886|Caenorhabditis elegans Hypothetical
protein F47G3.1 protein.
Length = 886
Score = 27.9 bits (59), Expect = 6.0
Identities = 24/105 (22%), Positives = 42/105 (40%), Gaps = 1/105 (0%)
Frame = -2
Query: 594 IKSYLIVITSREVSST-ILSFSLSHNVISVKSQDPRYSPSSGNSKMVIHSCMAASTTPFL 418
+K +L + + E T I+SF + S + + ++ +C +P +
Sbjct: 44 LKGFLTISPADENGDTYIVSFDIKEKPNDTLVWAVHTSSAPYDMAVMTDNCRRVKKSPPV 103
Query: 417 NVKKSFIFSLLNGTSYRGYTV*DSVGDNPEAFCCSCVLASAKELV 283
S + G G T+ S GDN E C+ V+ KEL+
Sbjct: 104 VKNMPVTDSTIAGDGLAGNTLVIS-GDNSEVLACATVIIPGKELM 147
>Z81564-6|CAB04572.1| 678|Caenorhabditis elegans Hypothetical
protein K05C4.6 protein.
Length = 678
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = -2
Query: 525 HNVISVKSQDPRYSPSSG-NSKMVIHSCMAASTTPFLNVKKSFIFSLLNGTSYRG 364
H + +DP + + G + + + + MAAS + +NV+++ I +L + + RG
Sbjct: 100 HRAYMLSREDPNFFNAPGFDHRSFVEALMAASKSSNVNVRRNAIGALSHMSEQRG 154
>AF273770-1|AAG15119.1| 469|Caenorhabditis elegans nuclear receptor
NHR-6 protein.
Length = 469
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/43 (25%), Positives = 25/43 (58%)
Frame = -2
Query: 549 TILSFSLSHNVISVKSQDPRYSPSSGNSKMVIHSCMAASTTPF 421
T+ +F + HN + + + P Y+P + ++ + + M + T+PF
Sbjct: 1 TMQAFQMPHNDLFLATAAPHYNPFALSNDFMPNPLMPSFTSPF 43
>AF047659-1|AAC04422.1| 146|Caenorhabditis elegans Hypothetical
protein K07H8.7 protein.
Length = 146
Score = 27.5 bits (58), Expect = 8.0
Identities = 16/51 (31%), Positives = 29/51 (56%)
Frame = +2
Query: 296 ADARTQEQQNASGLSPTESQTVYPRYDVPFNKENIKDFFTFRKGVVEAAIQ 448
AD+RT++ + S +SP E+ T P+ V E K+ +K V++ +I+
Sbjct: 48 ADSRTKKSASTSIVSPIET-TAIPKDSVMVKPEPPKEETKSKKSVIQNSIK 97
>AF016853-1|AAB94552.1| 678|Caenorhabditis elegans HMP-2 protein.
Length = 678
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = -2
Query: 525 HNVISVKSQDPRYSPSSG-NSKMVIHSCMAASTTPFLNVKKSFIFSLLNGTSYRG 364
H + +DP + + G + + + + MAAS + +NV+++ I +L + + RG
Sbjct: 100 HRAYMLSREDPNFFNAPGFDHRSFVEALMAASKSSNVNVRRNAIGALSHMSEQRG 154
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,800,429
Number of Sequences: 27780
Number of extensions: 337434
Number of successful extensions: 1046
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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