Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11p11f
         (613 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.1  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    21   7.2  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   7.2  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    21   7.2  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -1

Query: 136 PKLEIIF*NIAHCTQIYTLKHF 71
           P+L+++    A CTQ+Y+  +F
Sbjct: 210 PQLQLVKNYTADCTQVYSTGNF 231


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 140 GTLQLSTDNSAVGVVENQPSVT 205
           GT Q   D+   G + N+PS+T
Sbjct: 50  GTTQAQIDDVDKGNLVNEPSIT 71


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +1

Query: 442 HTGMYYHFAVSGGW 483
           H G+YYH   S  W
Sbjct: 12  HGGLYYHQRCSRDW 25


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 140 GTLQLSTDNSAVGVVENQPSVT 205
           GT Q   D+   G + N+PS+T
Sbjct: 50  GTTQAQIDDVDKGNLVNEPSIT 71


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,640
Number of Sequences: 438
Number of extensions: 4168
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)