Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11p09r
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    25   0.094
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    28   1.2  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    27   2.1  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    27   2.7  
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa...    27   3.6  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    25   8.4  

>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 25.4 bits (53), Expect(2) = 0.094
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 563 GRVTPVTEQQSPHTAALPPRTTRIHNPPTTPIRPNNSTL 447
           G  T VTE Q+P  + + P   R  N  +TPI+   + +
Sbjct: 236 GATTFVTEVQAPTLSIMVPLLARGLNERSTPIKRKTAVI 274



 Score = 25.0 bits (52), Expect(2) = 0.094
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -2

Query: 710 LISKMVVTLHRQLLRSLLDIVPVVMGRAMDTQQVVQEVTKMMVT 579
           L+  +V     QL  SL  I+PVV     DT+  V++ +K  +T
Sbjct: 157 LLDVLVEVAPSQLSYSLPQIIPVVSESMWDTKAEVKKQSKETMT 200


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
 Frame = -2

Query: 593 KMMVTAAEWAGRVTPVTEQQSPHTAALPPRTTR--IHNPPTTPIRPNNSTLTAMAVGDLF 420
           K+++T   W G      E +SP  +  P R     +HN   +P +P  S L    +  +F
Sbjct: 128 KVLLTCPSWDGENFKNLEARSPFISEAPSRVYDYFLHNQDWSP-KPLFSALQVYPLATIF 186

Query: 419 DC 414
           +C
Sbjct: 187 NC 188


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 17/62 (27%), Positives = 27/62 (43%)
 Frame = -2

Query: 653 IVPVVMGRAMDTQQVVQEVTKMMVTAAEWAGRVTPVTEQQSPHTAALPPRTTRIHNPPTT 474
           I P+V      T+ V + +   + T       +TP  E  +  TAA+   TT +    TT
Sbjct: 223 ITPMVEAMTTPTEVVGRSMVSTIRTTTPMEAMITPTVETTTLPTAAM---TTPVEETTTT 279

Query: 473 PI 468
           P+
Sbjct: 280 PM 281


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 560 RVTPVTEQQSPHTAALPPRTTRIHNP 483
           RV P T  Q+ H+ +LPP     H+P
Sbjct: 563 RVLPYTRSQAFHSTSLPPSLPSGHSP 588


>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 738

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -2

Query: 704 SKMVVTLHRQLLRSLLDIVPVVMGRAMDTQQVVQE-VTKMMVTAAEWAGRVTPVTEQ 537
           SKM + L +QLL SLL +      R+++T   ++E  TK+    +     V  VT+Q
Sbjct: 387 SKMELLLKKQLLPSLLQLETYYFRRSIETSLELEEYYTKVSPWMSSIVDDVMYVTKQ 443


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -3

Query: 388  LRSKDN*YLYKVDEISQVIGCT-TETSIELGVVK 290
            LR  ++  LY + + S++IGCT T  S  LG +K
Sbjct: 934  LRYYEDQELYALCQQSRIIGCTWTSLSTRLGTLK 967


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,466,854
Number of Sequences: 5004
Number of extensions: 41671
Number of successful extensions: 150
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)