Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11p09r
         (729 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_04_0005 + 7390697-7390705,7390943-7391096,7391225-7391424,739...    29   3.8  
04_04_0168 + 23259459-23260001,23260883-23262780,23263000-232631...    28   6.6  
09_04_0736 - 19815427-19815642,19815782-19816903,19817006-198177...    28   8.7  
03_06_0654 - 35307122-35307205,35307381-35307444,35307486-353075...    28   8.7  

>10_04_0005 +
           7390697-7390705,7390943-7391096,7391225-7391424,
           7391649-7391739,7392042-7392385
          Length = 265

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/57 (28%), Positives = 23/57 (40%)
 Frame = -2

Query: 644 VVMGRAMDTQQVVQEVTKMMVTAAEWAGRVTPVTEQQSPHTAALPPRTTRIHNPPTT 474
           VV  RA D  +V + V +      E    + P  E++    A  PP   +   PP T
Sbjct: 69  VVKSRAADPSKVCERVQRKTKRRVELIFPLPPPPEEEKKEEAPAPPPEEKKEEPPKT 125


>04_04_0168 +
           23259459-23260001,23260883-23262780,23263000-23263150,
           23263851-23264669
          Length = 1136

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = -3

Query: 337 VIGCTTETSI-ELGVVKIRLTRNTK 266
           +IGC  ET + E G V IR+T+N+K
Sbjct: 727 LIGCLDETGVLEYGQVYIRITKNSK 751


>09_04_0736 -
           19815427-19815642,19815782-19816903,19817006-19817707,
           19817808-19817855,19817959-19818201,19819035-19819391
          Length = 895

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = -2

Query: 563 GRVTPVTEQQSPHTAALPPRTTRIHNPPTTPIRPNNSTLTAMAVG 429
           G +    E  + H+A  P  T  +  PP  P  P +S + +  VG
Sbjct: 744 GNLAGAQEHPTQHSAYNPEMTLNLPPPPPPPTLPPSSAILSSQVG 788


>03_06_0654 -
           35307122-35307205,35307381-35307444,35307486-35307536,
           35307881-35307993,35308083-35308164,35308621-35308741,
           35308821-35308980,35309335-35309396,35309548-35309707,
           35309794-35310021
          Length = 374

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 16/36 (44%), Positives = 17/36 (47%)
 Frame = -2

Query: 587 MVTAAEWAGRVTPVTEQQSPHTAALPPRTTRIHNPP 480
           M+ AA  A R  P T   SP TA  PP T     PP
Sbjct: 1   MLAAAAAALRPAPTTAAFSPSTARSPPPTLLSFAPP 36


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,255,018
Number of Sequences: 37544
Number of extensions: 244587
Number of successful extensions: 743
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)