Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11p09r
         (729 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ400879-3|CAC35389.1| 1214|Homo sapiens KIAA0298 protein protein.     33   1.0  
AK127657-1|BAC87075.1|  266|Homo sapiens protein ( Homo sapiens ...    32   1.8  
M94131-1|AAA59163.1| 1270|Homo sapiens mucin protein.                  31   5.6  
M74027-1|AAA59875.1|  573|Homo sapiens mucin protein.                  31   5.6  
L21998-1|AAB95295.1| 5179|Homo sapiens mucin protein.                  31   5.6  

>AJ400879-3|CAC35389.1| 1214|Homo sapiens KIAA0298 protein protein.
          Length = 1214

 Score = 33.1 bits (72), Expect = 1.0
 Identities = 19/59 (32%), Positives = 24/59 (40%)
 Frame = -2

Query: 584  VTAAEWAGRVTPVTEQQSPHTAALPPRTTRIHNPPTTPIRPNNSTLTAMAVGDLFDCNR 408
            VT    AG+  P  E  SP    L PRT      P  PI   +     +  G+L  C+R
Sbjct: 927  VTVTSLAGQRPPEVEGTSPEEHRLIPRTPGAKKGPPAPIENEDFCAVCLNGGELLCCDR 985


>AK127657-1|BAC87075.1|  266|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45755 fis, clone MESAN2007032. ).
          Length = 266

 Score = 32.3 bits (70), Expect = 1.8
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = -2

Query: 575 AEWAGRVTPVTEQQSPHTAALPPRTTRIHNPPTTPIRPNNSTL 447
           A  A +V  +T+   P  ++L P T+ +H PPT+ +RP  S+L
Sbjct: 47  AREANQVPELTDSFRPPASSLRPPTSSLH-PPTSSLRPPTSSL 88


>M94131-1|AAA59163.1| 1270|Homo sapiens mucin protein.
          Length = 1270

 Score = 30.7 bits (66), Expect = 5.6
 Identities = 17/37 (45%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = -2

Query: 551  PVTEQQSPHTAAL-PPRTTRIHNPPTTPIRPNNSTLT 444
            P T    P T    PP TT    P TTPI P  ST T
Sbjct: 894  PTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTT 930



 Score = 30.7 bits (66), Expect = 5.6
 Identities = 17/37 (45%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = -2

Query: 551  PVTEQQSPHTAAL-PPRTTRIHNPPTTPIRPNNSTLT 444
            P T    P T    PP TT    P TTPI P  ST T
Sbjct: 973  PTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTT 1009



 Score = 29.9 bits (64), Expect = 9.8
 Identities = 18/39 (46%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = -2

Query: 554 TPVTEQQSPHTAAL--PPRTTRIHNPPTTPIRPNNSTLT 444
           +P T   SP T     PP TT    P TTPI P  ST T
Sbjct: 853 SPPTTTPSPPTTTTTTPPPTTTPSPPMTTPITPPASTTT 891


>M74027-1|AAA59875.1|  573|Homo sapiens mucin protein.
          Length = 573

 Score = 30.7 bits (66), Expect = 5.6
 Identities = 17/37 (45%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = -2

Query: 551 PVTEQQSPHTAAL-PPRTTRIHNPPTTPIRPNNSTLT 444
           P T    P T    PP TT    P TTPI P  ST T
Sbjct: 177 PTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTT 213



 Score = 30.7 bits (66), Expect = 5.6
 Identities = 17/37 (45%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = -2

Query: 551 PVTEQQSPHTAAL-PPRTTRIHNPPTTPIRPNNSTLT 444
           P T    P T    PP TT    P TTPI P  ST T
Sbjct: 256 PTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTT 292



 Score = 30.3 bits (65), Expect = 7.4
 Identities = 18/39 (46%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = -2

Query: 554 TPVTEQQSPHTAAL--PPRTTRIHNPPTTPIRPNNSTLT 444
           +P T   SP T     PP TT    P TTPI P  ST T
Sbjct: 136 SPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPASTTT 174



 Score = 29.9 bits (64), Expect = 9.8
 Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = -2

Query: 551 PVTEQQSPHTAALPPRTTRIHNPP-TTPIRPNNSTLTAMA 435
           P T    P T   PP TT    PP TTP  P  + +T  A
Sbjct: 131 PTTTPSPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPA 170


>L21998-1|AAB95295.1| 5179|Homo sapiens mucin protein.
          Length = 5179

 Score = 30.7 bits (66), Expect = 5.6
 Identities = 17/37 (45%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = -2

Query: 551  PVTEQQSPHTAAL-PPRTTRIHNPPTTPIRPNNSTLT 444
            P T    P T    PP TT    P TTPI P  ST T
Sbjct: 1519 PTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTT 1555



 Score = 30.7 bits (66), Expect = 5.6
 Identities = 17/37 (45%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = -2

Query: 551  PVTEQQSPHTAAL-PPRTTRIHNPPTTPIRPNNSTLT 444
            P T    P T    PP TT    P TTPI P  ST T
Sbjct: 1598 PTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTT 1634



 Score = 29.9 bits (64), Expect = 9.8
 Identities = 18/39 (46%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = -2

Query: 554  TPVTEQQSPHTAAL--PPRTTRIHNPPTTPIRPNNSTLT 444
            +P T   SP T     PP TT    P TTPI P  ST T
Sbjct: 1478 SPPTTTPSPPTTTTTTPPPTTTPSPPMTTPITPPASTTT 1516


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,160,356
Number of Sequences: 237096
Number of extensions: 1485663
Number of successful extensions: 7710
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7678
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8623170556
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)