Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11p09r
(729 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53153-2|AAQ91899.1| 422|Caenorhabditis elegans Hypothetical pr... 32 0.48
U53153-1|AAC69039.4| 715|Caenorhabditis elegans Hypothetical pr... 32 0.48
Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical pr... 31 0.64
CU457740-4|CAM36334.1| 735|Caenorhabditis elegans Hypothetical ... 29 2.6
Z99772-1|CAB16921.1| 794|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z75550-14|CAA99932.1| 794|Caenorhabditis elegans Hypothetical p... 29 3.4
Z92822-7|CAH10786.1| 601|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z83244-9|CAH10804.1| 601|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z83244-1|CAB05827.2| 634|Caenorhabditis elegans Hypothetical pr... 28 5.9
AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical ... 28 5.9
AF145376-1|AAD39815.1| 634|Caenorhabditis elegans LIT-1 protein. 28 5.9
AC006620-1|AAF39780.1| 754|Caenorhabditis elegans Hypothetical ... 28 5.9
Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical pr... 28 7.9
AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical ... 28 7.9
>U53153-2|AAQ91899.1| 422|Caenorhabditis elegans Hypothetical
protein T19A5.3b protein.
Length = 422
Score = 31.9 bits (69), Expect = 0.48
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -2
Query: 524 TAALPPRTTRIHNPPTTPI-RPNNSTLTAMA 435
T LPP TT I+ PPTT RP +T T A
Sbjct: 216 TTTLPPETTTIYVPPTTASRRPTTTTTTTEA 246
>U53153-1|AAC69039.4| 715|Caenorhabditis elegans Hypothetical
protein T19A5.3a protein.
Length = 715
Score = 31.9 bits (69), Expect = 0.48
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -2
Query: 524 TAALPPRTTRIHNPPTTPI-RPNNSTLTAMA 435
T LPP TT I+ PPTT RP +T T A
Sbjct: 284 TTTLPPETTTIYVPPTTASRRPTTTTTTTEA 314
>Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical
protein Y49E10.10 protein.
Length = 425
Score = 31.5 bits (68), Expect = 0.64
Identities = 24/58 (41%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = -2
Query: 620 TQQVVQEVTKMMVTAAEWAGRVTPVTEQQSPHTA-ALPPRTTRIHNPPTTPIRPNNST 450
T V E T TAAE P TE P T A PP TT+ PPTT P +T
Sbjct: 153 TAPVTPEPTVKNTTAAE------PTTEAPPPPTTKAPPPPTTKAPPPPTTKAPPPPTT 204
>CU457740-4|CAM36334.1| 735|Caenorhabditis elegans Hypothetical
protein C50E10.4 protein.
Length = 735
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = -2
Query: 623 DTQQVVQEVTKMMVTAAEWAGRVTPVTEQQSPHTAALPPRTTRIHNPPTTP 471
+T V+Q+ +++ TAA AGR P QQ PH +PP+ R P P
Sbjct: 528 ETPPVLQQ-EQVISTAAPTAGR-HPNIIQQVPHINRIPPQPLRRLTAPQAP 576
>Z99772-1|CAB16921.1| 794|Caenorhabditis elegans Hypothetical
protein H05L14.1 protein.
Length = 794
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = -2
Query: 617 QQVVQEVTKMM---VTAAEWAGRVTPVTEQQSPHTAA 516
+++VQ V K +T +W G++TPV ++ + TAA
Sbjct: 386 KEIVQNVGKSKGHDMTTCDWVGKITPVNQEIAIKTAA 422
>Z75550-14|CAA99932.1| 794|Caenorhabditis elegans Hypothetical
protein H05L14.1 protein.
Length = 794
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = -2
Query: 617 QQVVQEVTKMM---VTAAEWAGRVTPVTEQQSPHTAA 516
+++VQ V K +T +W G++TPV ++ + TAA
Sbjct: 386 KEIVQNVGKSKGHDMTTCDWVGKITPVNQEIAIKTAA 422
>Z92822-7|CAH10786.1| 601|Caenorhabditis elegans Hypothetical
protein W06F12.1d protein.
Length = 601
Score = 28.3 bits (60), Expect = 5.9
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Frame = -2
Query: 695 VVTLHRQLLRSLLDIVP-----VVMGRAMDTQQVVQEVTKMMVTAAEWAGRVTPVTEQQS 531
+++ +Q+L + I+P V QQ+ V +V AA P Q
Sbjct: 43 LISRQQQILSQAIPIIPEHQLAAVAAHHQHHQQLHPSVQYQLVAAATHHNHHQPQAAQ-- 100
Query: 530 PHTAALPPRTTRIHNPP 480
PH +A+ PR+ I PP
Sbjct: 101 PHYSAVVPRSDVIQQPP 117
>Z83244-9|CAH10804.1| 601|Caenorhabditis elegans Hypothetical
protein W06F12.1d protein.
Length = 601
Score = 28.3 bits (60), Expect = 5.9
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Frame = -2
Query: 695 VVTLHRQLLRSLLDIVP-----VVMGRAMDTQQVVQEVTKMMVTAAEWAGRVTPVTEQQS 531
+++ +Q+L + I+P V QQ+ V +V AA P Q
Sbjct: 43 LISRQQQILSQAIPIIPEHQLAAVAAHHQHHQQLHPSVQYQLVAAATHHNHHQPQAAQ-- 100
Query: 530 PHTAALPPRTTRIHNPP 480
PH +A+ PR+ I PP
Sbjct: 101 PHYSAVVPRSDVIQQPP 117
>Z83244-1|CAB05827.2| 634|Caenorhabditis elegans Hypothetical
protein W06F12.1a protein.
Length = 634
Score = 28.3 bits (60), Expect = 5.9
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Frame = -2
Query: 695 VVTLHRQLLRSLLDIVP-----VVMGRAMDTQQVVQEVTKMMVTAAEWAGRVTPVTEQQS 531
+++ +Q+L + I+P V QQ+ V +V AA P Q
Sbjct: 76 LISRQQQILSQAIPIIPEHQLAAVAAHHQHHQQLHPSVQYQLVAAATHHNHHQPQAAQ-- 133
Query: 530 PHTAALPPRTTRIHNPP 480
PH +A+ PR+ I PP
Sbjct: 134 PHYSAVVPRSDVIQQPP 150
>AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical
protein Y79H2A.3a protein.
Length = 2129
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -1
Query: 495 YSQPAYNSYPPQQQYSNSYG 436
Y Q Y PPQ QY+ YG
Sbjct: 2034 YQQQMYQQQPPQPQYAQQYG 2053
>AF145376-1|AAD39815.1| 634|Caenorhabditis elegans LIT-1 protein.
Length = 634
Score = 28.3 bits (60), Expect = 5.9
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Frame = -2
Query: 695 VVTLHRQLLRSLLDIVP-----VVMGRAMDTQQVVQEVTKMMVTAAEWAGRVTPVTEQQS 531
+++ +Q+L + I+P V QQ+ V +V AA P Q
Sbjct: 76 LISRQQQILSQAIPIIPEHQLAAVAAHHQHHQQLHPSVQYQLVAAATHHNHHQPQAAQ-- 133
Query: 530 PHTAALPPRTTRIHNPP 480
PH +A+ PR+ I PP
Sbjct: 134 PHYSAVVPRSDVIQQPP 150
>AC006620-1|AAF39780.1| 754|Caenorhabditis elegans Hypothetical
protein C51G7.3 protein.
Length = 754
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -1
Query: 495 YSQPAYNSYPPQQQYSNSYG 436
Y Q Y PPQ QY+ YG
Sbjct: 659 YQQQMYQQQPPQPQYAQQYG 678
>Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical
protein C46C2.1b protein.
Length = 1677
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -2
Query: 533 SPHTAALPPRTTRIHNPPTTPIRPNNSTLTAMAV 432
SP +AA+P TT IH P + I N TA V
Sbjct: 813 SPTSAAVPVPTTMIHVPKPSEIPVQNVATTAAPV 846
>Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical
protein C46C2.1a protein.
Length = 1838
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -2
Query: 533 SPHTAALPPRTTRIHNPPTTPIRPNNSTLTAMAV 432
SP +AA+P TT IH P + I N TA V
Sbjct: 813 SPTSAAVPVPTTMIHVPKPSEIPVQNVATTAAPV 846
>AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical
protein M01E10.2 protein.
Length = 1286
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = -2
Query: 581 TAAEWAGRVTPVTE-QQSPHTAALPPRTTRIHNPPTTPI 468
T WA P T +Q+P T PP T + PPT+ +
Sbjct: 395 TKQTWAPWTPPTTTTRQTPPTTQAPPITPPPYRPPTSVV 433
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,599,989
Number of Sequences: 27780
Number of extensions: 235524
Number of successful extensions: 905
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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