Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11p09f
         (567 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc...    27   1.5  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.4  
SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces ...    25   5.9  
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    25   5.9  

>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
           Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 609

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -1

Query: 396 KSSPSITASAHRATSETTWASTHRRPAPRWSTATSHAKSTPSTY 265
           KS   +  + +   S T   S H RP+P+ +TA S + S  S +
Sbjct: 244 KSRRLLLEAKYPTVSPTNEPSAHSRPSPQGTTANSSSASISSLH 287


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 13/49 (26%), Positives = 27/49 (55%)
 Frame = -1

Query: 414 SLRSRWKSSPSITASAHRATSETTWASTHRRPAPRWSTATSHAKSTPST 268
           +L S   +SP+ ++S+H  +S ++        +   S++ SH+ S PS+
Sbjct: 105 TLTSSSSASPTSSSSSHALSSSSSSLVASSSSSGMSSSSLSHSSSVPSS 153


>SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 245

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -1

Query: 402 RWKSSPSITASAHRATSETTWASTHRRPAPRWSTATSHAKS 280
           ++  +P+ T+    +TSE++   T  RPA   +  T+ A S
Sbjct: 163 KFSPNPTQTSPGKPSTSESSQTDTSTRPANSQTPTTTRASS 203


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -1

Query: 402 RWKSSPSITASAHRA-TSETTWASTHRRPAPRWSTATSHAKST 277
           R  S  +I  +  R+ TS  T +   R    RWS+ +SH+K +
Sbjct: 465 RSSSQSNIEPNGVRSPTSSPTGSPIRRTSGNRWSSGSSHSKKS 507


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,765,221
Number of Sequences: 5004
Number of extensions: 33852
Number of successful extensions: 103
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)