Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11p09f
(567 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0659 + 30679809-30680253,30680699-30680715,30682373-306825... 29 2.6
12_01_0818 + 7524549-7524747,7524855-7525863,7525964-7526108,752... 29 3.4
09_02_0203 - 5746068-5746307,5746469-5746729,5746833-5748239,574... 29 3.4
11_06_0380 + 22937941-22937984,22939375-22941481 28 4.5
03_01_0534 + 3996479-3997458,3997938-3998265 28 4.5
10_07_0172 + 13804803-13805293,13805423-13805537,13805766-138058... 28 6.0
08_01_0386 + 3424561-3425346 27 7.9
06_03_0646 + 23118440-23118615,23118701-23119021,23119111-231191... 27 7.9
06_01_0277 - 2039129-2040280 27 7.9
05_01_0243 - 1806770-1806832,1806942-1807061,1807275-1807457,180... 27 7.9
>02_05_0659 +
30679809-30680253,30680699-30680715,30682373-30682530,
30682570-30682846
Length = 298
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -1
Query: 408 RSRWKSSPSITASAHRATSETTWASTHRRPAPRWSTATS 292
R W+S+PS + R+T+ A ++RP PR + A S
Sbjct: 10 RFLWRSTPSPHPALGRSTTPPHAARWYKRPLPRTAAAAS 48
>12_01_0818 +
7524549-7524747,7524855-7525863,7525964-7526108,
7526206-7526295,7526404-7526553,7527333-7528094,
7528177-7528496,7528581-7528707,7528792-7528959,
7529054-7530466,7530563-7530823,7530983-7531144,
7531976-7532121,7532601-7532667,7533483-7533587
Length = 1707
Score = 28.7 bits (61), Expect = 3.4
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 438 GRYWMWTRSLRSRWKSSPSITASA 367
GR WMWTR LR K + + S+
Sbjct: 829 GRIWMWTRCLRCNGKPTQRVIISS 852
>09_02_0203 -
5746068-5746307,5746469-5746729,5746833-5748239,
5748588-5748714,5748800-5749119,5749202-5749963,
5750749-5750898,5751007-5751096,5751196-5751340,
5751440-5751617,5751753-5752448,5752555-5752753
Length = 1524
Score = 28.7 bits (61), Expect = 3.4
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 438 GRYWMWTRSLRSRWKSSPSITASA 367
GR WMWTR LR K + + S+
Sbjct: 784 GRIWMWTRCLRCNGKPTQRVIISS 807
>11_06_0380 + 22937941-22937984,22939375-22941481
Length = 716
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -1
Query: 462 RWCTTRLNGRYWMWTRSLRSRWKSSPSITASAHRATS 352
RW +R G++ +W + + S P+ AHRA S
Sbjct: 483 RWDFSRFQGQWALWVANRVNGGDSDPAALGPAHRALS 519
>03_01_0534 + 3996479-3997458,3997938-3998265
Length = 435
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = -1
Query: 387 PSITASAHRATSETTWASTHRRPAPRWSTATSHAKSTPSTY 265
P++ ++ E WA+ +R PRW + + A + +TY
Sbjct: 276 PTLKSTVRGLLKEGGWAACYRGLGPRWGSMSLSAATMVTTY 316
>10_07_0172 +
13804803-13805293,13805423-13805537,13805766-13805831,
13805921-13806009,13806103-13806193,13806312-13806458,
13806575-13806667,13806745-13806846,13806957-13807541,
13808523-13808813,13808866-13808937
Length = 713
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/58 (25%), Positives = 24/58 (41%)
Frame = -3
Query: 310 VVHRDLSCQIHPVHVHRNHLFPSFLVVHRVLHHGNHDLVGLPSLAGSWKQEQVKIIYY 137
V H + + +H HL P H + H G DL G+ + Q K+++Y
Sbjct: 629 VPHDETVLVVEELHSDLGHLTPGAGAAHHLHHDGKFDL-GIHAAQAGSIYSQAKLMFY 685
>08_01_0386 + 3424561-3425346
Length = 261
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -1
Query: 393 SSPSITASAHRATSETTWASTH 328
SSP+ ASA A S WAS H
Sbjct: 23 SSPAAAASASPAASAVVWASNH 44
>06_03_0646 +
23118440-23118615,23118701-23119021,23119111-23119172,
23119291-23119313
Length = 193
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 359 ARCAEAVIEGEDFHLDRKDLV-HIQYLPLSRVVHHLHVVALTIEGG 493
A+ + ++G + L + DL H Y PL R +H + L + GG
Sbjct: 83 AKLVKVAVDGAPY-LRKVDLAAHAGYAPLLRALHGMFASCLAVRGG 127
>06_01_0277 - 2039129-2040280
Length = 383
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = -3
Query: 283 IHPVHVHRNHLFPSFLVVHRVLHHGNH--DLVGLPSLAGSWKQEQVKIIYYDVNCV 122
+ P+ + H FP + V ++H G + D G PS+ S +E ++ +DV+ V
Sbjct: 264 LFPLLLSPAHRFPFYDGVFDLVHVGTNALDEGGAPSMGNSGTEEALEFFMFDVDRV 319
>05_01_0243 -
1806770-1806832,1806942-1807061,1807275-1807457,
1807554-1807693,1807768-1808010,1808664-1808781,
1808902-1808977,1809054-1809120,1809201-1809288,
1809381-1809491,1809632-1809799,1809946-1810040,
1810123-1810162,1810242-1810318,1810607-1810655,
1810756-1810812,1810959-1811048,1811160-1811223,
1812085-1812245
Length = 669
Score = 27.5 bits (58), Expect = 7.9
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -1
Query: 84 KKDNRKIYNPIFSTAM**SVYPPLQPNI 1
+KD R P+F +A+ +PPL+P++
Sbjct: 19 RKDGRPAVGPVFRSALSKDGFPPLEPDM 46
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,963,956
Number of Sequences: 37544
Number of extensions: 241896
Number of successful extensions: 770
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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