Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11p09f
         (567 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26017| Best HMM Match : Extensin_2 (HMM E-Value=0.11)               31   0.66 
SB_57163| Best HMM Match : 3HCDH_N (HMM E-Value=2.4)                   29   2.0  
SB_40561| Best HMM Match : Keratin_B2 (HMM E-Value=1.1)                29   2.0  
SB_20023| Best HMM Match : 7tm_1 (HMM E-Value=3.4e-25)                 28   4.6  
SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  

>SB_26017| Best HMM Match : Extensin_2 (HMM E-Value=0.11)
          Length = 1704

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = -1

Query: 393 SSPSITASAHRATSET---TWASTHRRPAPRWSTATSHAKSTPS 271
           S+  +   AH+ +++T   T   +++RP  R S AT H KS+P+
Sbjct: 605 SASLVPVQAHQTSAKTVDQTAIGSNKRPGKRTSPATGHGKSSPA 648


>SB_57163| Best HMM Match : 3HCDH_N (HMM E-Value=2.4)
          Length = 303

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 465 WRWCTTRLNGRYWMWTRSLRSRW 397
           WRW   R NG+ W + +  R  W
Sbjct: 235 WRWVCRRRNGKCWAYKKQRRMGW 257


>SB_40561| Best HMM Match : Keratin_B2 (HMM E-Value=1.1)
          Length = 1139

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
 Frame = -1

Query: 471  TTWRWCTTRLNGRYWMWTRS--LRSRWKSSP-SITASAHRATSETTWA--STHRRPAPRW 307
            TT    TT  N R    T+S  L SR + +P + T + HR   +T     S+ +RPAP  
Sbjct: 834  TTTPITTTITNHRLNCHTKSVILSSRKRPAPITTTITNHRLNCQTNSVILSSRKRPAPIT 893

Query: 306  STATSH 289
            +T T+H
Sbjct: 894  TTITNH 899



 Score = 29.1 bits (62), Expect = 2.6
 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
 Frame = -1

Query: 492 PPSIVKATTWRWCTTRLNGRYWMWTRS--LRSRWKSSP-SITASAHRATSETTWA--STH 328
           P +    TT    TT  N R    T S  L SR + +P + T + HR   +T     S+ 
Sbjct: 217 PITTTPITTTPITTTITNHRLNCHTSSVILSSRKRPAPITTTITNHRLNCQTNSVILSSR 276

Query: 327 RRPAPRWSTATSH 289
           +RPAP  +T T+H
Sbjct: 277 KRPAPITTTITNH 289



 Score = 27.9 bits (59), Expect = 6.1
 Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
 Frame = -1

Query: 471 TTWRWCTTRLNGRYWMWTRS--LRSRWKSSP-SITASAHRATSETTWA--STHRRPAPRW 307
           TT    TT  N R    T S  L SR + +P + T + HR    T     S+ +RPAP  
Sbjct: 450 TTTPITTTITNHRLNCHTNSGILSSRKRPAPITTTITNHRLNCHTNSVILSSRKRPAPIT 509

Query: 306 STATSH 289
           +T T+H
Sbjct: 510 TTITNH 515



 Score = 27.9 bits (59), Expect = 6.1
 Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
 Frame = -1

Query: 471 TTWRWCTTRLNGRYWMWTRS--LRSRWKSSP-SITASAHRATSETTWA--STHRRPAPRW 307
           TT    TT  N R    T S  L SR + +P + T + HR    T     S+ +RPAP  
Sbjct: 598 TTTPITTTITNHRLNCHTNSGILSSRKRPAPITTTITNHRLNCHTNSVILSSRKRPAPIT 657

Query: 306 STATSH 289
           +T T+H
Sbjct: 658 TTITNH 663



 Score = 27.5 bits (58), Expect = 8.1
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
 Frame = -1

Query: 453 TTRLNGRYWMWTRS--LRSRWKSSP-SITASAHRATSETTWA--STHRRPAPRWSTATSH 289
           TT  N R    T S  L SR + +P + T + HR    T+    S+ +RPAP  +T T+H
Sbjct: 257 TTITNHRLNCQTNSVILSSRKRPAPITTTITNHRLNCHTSSVILSSRKRPAPITTTITNH 316



 Score = 27.5 bits (58), Expect = 8.1
 Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
 Frame = -1

Query: 471 TTWRWCTTRLNGRYWMWTRS--LRSRWKSSP-SITASAHRATSETTWA--STHRRPAPRW 307
           TT    TT  N R    T S  L SR + +P + T + HR    T     S+ +RPAP  
Sbjct: 364 TTTPITTTITNHRLNCHTSSVILSSRKRPAPITTTITNHRLNCHTNSVILSSRKRPAPIT 423

Query: 306 STATSH 289
           +T T+H
Sbjct: 424 TTITNH 429


>SB_20023| Best HMM Match : 7tm_1 (HMM E-Value=3.4e-25)
          Length = 548

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
 Frame = -1

Query: 453 TTRLNGRYWMWTRS--LRSRWKSSP-SITASAHRATSETTWA--STHRRPAPRWSTATSH 289
           TT  N R    T S  L SR + +P S T + HR    T     S+ +RPAP  +T T+H
Sbjct: 464 TTITNHRLNCHTNSVILSSRKRPAPISTTITNHRLNCHTNSVILSSRKRPAPITTTITNH 523


>SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3293

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 10/56 (17%)
 Frame = -1

Query: 399 WKSSPSITASAHR---------ATSETTWASTHRRPAPRWST-ATSHAKSTPSTYI 262
           W SSP   A+ H          AT    W S+ + PA R +  ATSH    P+  I
Sbjct: 829 WTSSPQSPATLHNARTSSPQSPATRHNAWTSSPQSPATRHNAQATSHQAQEPADRI 884


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,612,307
Number of Sequences: 59808
Number of extensions: 267757
Number of successful extensions: 2349
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2342
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)