Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11p09f
         (567 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73897-3|CAE18053.1|  178|Caenorhabditis elegans Hypothetical pr...    31   0.44 
U64839-1|AAB04844.2|  399|Caenorhabditis elegans Acyltransferase...    29   2.3  
AC006832-2|AAO38580.1|  366|Caenorhabditis elegans Hypothetical ...    29   2.3  
AC006832-1|AAO38581.1|  376|Caenorhabditis elegans Hypothetical ...    29   2.3  
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p...    28   4.1  
U61954-7|AAK29803.1| 1140|Caenorhabditis elegans Hypothetical pr...    27   7.1  
U97550-1|AAK18983.2| 1065|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>Z73897-3|CAE18053.1|  178|Caenorhabditis elegans Hypothetical
           protein ZK617.4 protein.
          Length = 178

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 17/48 (35%), Positives = 28/48 (58%)
 Frame = -1

Query: 411 LRSRWKSSPSITASAHRATSETTWASTHRRPAPRWSTATSHAKSTPST 268
           L++  K S S   S H A+  ++ +S+ RR  PR    +SH+ S+PS+
Sbjct: 9   LQNLLKKSASNDGSDHGASPSSSTSSSSRRLPPRPPLESSHSASSPSS 56


>U64839-1|AAB04844.2|  399|Caenorhabditis elegans
           Acyltransferase-like protein 9 protein.
          Length = 399

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 362 RCAEAVIEGEDFHLDRKDLVHIQYLPLSRVVHHLHVV 472
           +C +A  E    H ++K LVH QY+   RV   +H+V
Sbjct: 187 KCPKAT-ERSRIHSEKKGLVHYQYVLHPRVTGFVHIV 222


>AC006832-2|AAO38580.1|  366|Caenorhabditis elegans Hypothetical
           protein ZK355.2a protein.
          Length = 366

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 10/62 (16%)
 Frame = -1

Query: 429 WMWTRSLRSRWK-SSPSITASAHRATSETTWASTHRRPAPR---------WSTATSHAKS 280
           W      RS+ K  S S   SA  +T+ +TW+S H R   R         W  AT+H+ S
Sbjct: 289 WAILYVFRSKTKLRSDSDEDSAESSTASSTWSSNHSRNNVRIADVITVRNWRRATAHSPS 348

Query: 279 TP 274
            P
Sbjct: 349 LP 350


>AC006832-1|AAO38581.1|  376|Caenorhabditis elegans Hypothetical
           protein ZK355.2b protein.
          Length = 376

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 10/62 (16%)
 Frame = -1

Query: 429 WMWTRSLRSRWK-SSPSITASAHRATSETTWASTHRRPAPR---------WSTATSHAKS 280
           W      RS+ K  S S   SA  +T+ +TW+S H R   R         W  AT+H+ S
Sbjct: 299 WAILYVFRSKTKLRSDSDEDSAESSTASSTWSSNHSRNNVRIADVITVRNWRRATAHSPS 358

Query: 279 TP 274
            P
Sbjct: 359 LP 360


>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
           protein T19D12.1 protein.
          Length = 1844

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 17/39 (43%), Positives = 24/39 (61%)
 Frame = -1

Query: 384 SITASAHRATSETTWASTHRRPAPRWSTATSHAKSTPST 268
           SIT S  +ATS ++  +T    AP+ STA S   ++PST
Sbjct: 810 SIT-STQQATSTSSVITTGSTSAPQSSTAVSSTTTSPST 847


>U61954-7|AAK29803.1| 1140|Caenorhabditis elegans Hypothetical protein
            F41H10.3a protein.
          Length = 1140

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -1

Query: 378  TASAHRATSETTWASTHRRPAPRWSTATSHAKSTPST 268
            T SA   T+ETT   +++   P   T TSH + TP T
Sbjct: 1068 TISAGSTTTETTTGDSNQSNPPL-RTYTSHIRKTPGT 1103


>U97550-1|AAK18983.2| 1065|Caenorhabditis elegans Hypothetical
           protein T20F7.5 protein.
          Length = 1065

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 363 RATSETTWASTHRRPAPRWS 304
           R++S   W+ST R+  PRWS
Sbjct: 542 RSSSNLGWSSTTRKVYPRWS 561


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,849,872
Number of Sequences: 27780
Number of extensions: 192175
Number of successful extensions: 645
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)