Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11p09f
         (567 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   2.1  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   3.7  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   8.6  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   8.6  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   8.6  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 333 THRRPAPRWSTATSHAKSTPS 271
           T  RPA  + TATSH  S P+
Sbjct: 23  TSHRPAWWFWTATSHEASAPA 43


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 321 PAPRWSTATSHAKS 280
           P+P W T T  AK+
Sbjct: 132 PSPEWDTVTPEAKN 145


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 66  FCDCLSLSLYSFYAILD 116
           +C+  SLS+  F A+LD
Sbjct: 540 YCNLFSLSVDHFNAVLD 556


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 66  FCDCLSLSLYSFYAILD 116
           +C+  SLS+  F A+LD
Sbjct: 508 YCNLFSLSVDHFNAVLD 524


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 187 PSLAGSWKQEQVKIIYYD 134
           P+L   WK E+++ IY +
Sbjct: 489 PNLLEGWKVEKIQEIYLE 506


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,757
Number of Sequences: 438
Number of extensions: 2559
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)