Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11p08r
(535 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi... 29 0.33
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 26 3.1
SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom... 25 5.4
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po... 25 5.4
SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-... 25 7.1
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 25 7.1
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||... 25 9.4
SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr... 25 9.4
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 25 9.4
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c... 25 9.4
>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
Ran1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 470
Score = 29.5 bits (63), Expect = 0.33
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +1
Query: 91 HNPVLRLHYLNLSREFRSLARGGGDL--RNRFTLSMVSSLVSEVRN 222
HNP L L +SRE SL D + R TL +S+LVS +N
Sbjct: 255 HNPSTLLSILPISRELNSLLNRIFDRNPKTRITLPELSTLVSNCKN 300
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 26.2 bits (55), Expect = 3.1
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +1
Query: 193 VSSLVSEVRNGFRFAVSVRV-TVASTHSNNNVRLVVVVESLLQLTS 327
V SL ++ + R A V TVA +N+ RL VV++SLL + S
Sbjct: 1288 VDSLPTDANDRLREATVVLFGTVAQHLPSNDPRLAVVMDSLLSVLS 1333
>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 605
Score = 25.4 bits (53), Expect = 5.4
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -2
Query: 330 ETGELKEALDDDNKPHVIVAVRGSYSYTNTDGKPETI 220
ETG E D++ V+V + + DGKP I
Sbjct: 85 ETGTYPEKDDENTNLQVVVDTKAQLNVNVNDGKPNDI 121
>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 374
Score = 25.4 bits (53), Expect = 5.4
Identities = 13/50 (26%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +1
Query: 178 FTLSMVSSLVSEVRNGFRFAVSVRVTVASTHSNNNVRLVVVVESLL-QLT 324
F+ ++ L + +G +AVS++ + ++ N+ +L ++ SLL Q+T
Sbjct: 247 FSAEFLNGLTDHMDSGIDYAVSLQKLIDASMDKNSQKLARLIFSLLYQIT 296
>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
L-lysine forming] |Schizosaccharomyces pombe|chr
1|||Manual
Length = 368
Score = 25.0 bits (52), Expect = 7.1
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -2
Query: 318 LKEALDDDNKPHVIVAVRGSYSYTNTDGKPETITYFADETG 196
LKE ++DN P ++ ++ Y N +G E ++ F G
Sbjct: 76 LKELPENDNSPLKHTHIQFAHCYKNQEGWREVLSRFPAGNG 116
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 25.0 bits (52), Expect = 7.1
Identities = 12/52 (23%), Positives = 23/52 (44%)
Frame = -2
Query: 375 AYNYNFETSNGIVRSETGELKEALDDDNKPHVIVAVRGSYSYTNTDGKPETI 220
A N + ++ +++++D +PHV+VA G + ETI
Sbjct: 97 ALGANLNLKHALIVGGMDMIRQSIDLSKRPHVVVATPGRLADLIRSNGEETI 148
>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1116
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -3
Query: 212 SLTRLDTMLRVNLFLRSPPPRAKLLNS 132
SL+ L LR + +R PP +K++NS
Sbjct: 685 SLSPLSYRLRKSKHIRESPPSSKVINS 711
>SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 382
Score = 24.6 bits (51), Expect = 9.4
Identities = 9/31 (29%), Positives = 15/31 (48%)
Frame = -1
Query: 526 IGYQQERTKTIKNEIDHRCSSRPCGYRHRCP 434
+GY+ + + RC+ PC YR+ P
Sbjct: 235 VGYKPKCNRIFFTRNGRRCAELPCTYRNLYP 265
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 24.6 bits (51), Expect = 9.4
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = +1
Query: 277 NNVRLVV---VVESLLQLTSFATHDAVGSLEIVVVSSIGAGVEFRPNDLRVVL 426
+N+ LVV + S Q+TS ++ SLE ++ +GA R +D +V L
Sbjct: 956 SNIALVVDELINLSSKQITSHPQSLSIASLEASLIFVLGASSIIREDDSKVTL 1008
>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 594
Score = 24.6 bits (51), Expect = 9.4
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 245 TLTANLKPLRTSLTRLDTMLRVNLFLRSPPPRAKLLNSL 129
TLTA+L+ T L+T L+ + PP L++S+
Sbjct: 139 TLTASLERATQPPTNLETALQFRVIRTIPPNSLDLMHSV 177
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,066,836
Number of Sequences: 5004
Number of extensions: 38785
Number of successful extensions: 120
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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