Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11p07r
         (432 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    30   0.17 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   6.6  
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    24   8.7  
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   8.7  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    24   8.7  

>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 29.9 bits (64), Expect = 0.17
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 218 YNQYLKMSTTTCNCNSRXRVVYGGNSADSXRE 123
           YN+   M T++C+C+S  +  YGGN A    E
Sbjct: 51  YNEITNMDTSSCSCSSTPK-SYGGNLAPFDEE 81


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 216  QPVLEDEYDDLQLQQSXP 163
            QP++ + YD +Q+QQ  P
Sbjct: 1320 QPMMSNYYDPMQMQQQTP 1337


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +2

Query: 362 ISEVVXSVNDLDIVSGHDE 418
           ISE+V SVN LD++S  ++
Sbjct: 315 ISEIVVSVNKLDLMSWSED 333


>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +2

Query: 287 VQXACLHHRRRQFSSFEGLVXEPSFISEVV 376
           +Q  C +  +R+ SS++    + SF+SEV+
Sbjct: 799 IQQGCFNVIKRRLSSYKWDKSDDSFVSEVL 828


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 40  SSQASLNWRLXMKNRTSFSYLAGWKNHCSLXLS 138
           S+  S    L  K  T FSY AG  + CS+ +S
Sbjct: 123 SATVSRKSSLQEKYSTRFSYKAGCSDSCSVTVS 155


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,291,796
Number of Sequences: 5004
Number of extensions: 19646
Number of successful extensions: 49
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)