Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11p07r
         (432 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006618-3|AAK68251.3|  960|Caenorhabditis elegans Patched relat...    29   1.1  
Z36719-3|CAA85314.1|  135|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>AC006618-3|AAK68251.3|  960|Caenorhabditis elegans Patched related
           family protein 4 protein.
          Length = 960

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 15/91 (16%)
 Frame = -2

Query: 269 ITLW-ENNRVYFKIXNIKYNQYLKMSTTTCNCNSRXR----VVYGGNSADSXRE------ 123
           + LW ++  V FK   IK N  L++S       +R +    V+YG +      E      
Sbjct: 223 LNLWIKHADVLFKDGKIKANPNLQLSYPVLYLFNRPKDIGNVIYGVDVKGEKNEIQGARV 282

Query: 122 ---QWFFQ-PAKYENDVLFFXYNRQFNDAWE 42
               WF   PA  EN+  ++ Y ++ N+ WE
Sbjct: 283 LTIHWFVNYPATAENNRAYYAYRQKLNEYWE 313


>Z36719-3|CAA85314.1|  135|Caenorhabditis elegans Hypothetical
           protein C06C3.7 protein.
          Length = 135

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = -1

Query: 375 TTSLMKLGSXTNPSNXENCLRRWCRQAX*TRQLEVHYLVGEQQSVLQDPQH*VQ 214
           T   +K+     P      + +  R+A   R  EVHY   EQQ ++ + +  VQ
Sbjct: 67  TAKEVKIPLLRTPDEEARKIEKLRREARIKRSKEVHYDAAEQQQIMMNYEWTVQ 120


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,219,402
Number of Sequences: 27780
Number of extensions: 113734
Number of successful extensions: 386
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)