Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11p03r
         (770 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    29   0.97 
SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch...    28   1.3  
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    27   3.9  
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.9  
SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomy...    26   5.2  
SPBC1604.11 |atp17||F0 ATPase subunit F|Schizosaccharomyces pomb...    25   9.1  

>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 28.7 bits (61), Expect = 0.97
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +1

Query: 424 SVREIKYLCYQSYGPQYFHDGLASRFPHIFCPSPVSVNKFSWFYERSS 567
           S+  +K L YQ  G +YF      + P  F  +   +NK+  F+ R+S
Sbjct: 743 SLEHLKGLLYQQVGSEYF-GKQTFQSPKFFMEAAKGLNKWDAFFRRNS 789


>SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate
           dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 171 KYKIISNIIGRERNKNYHLIHICAK 245
           KY+    I+G    KN+HL+H  A+
Sbjct: 288 KYRTYPKIVGETGGKNFHLVHSSAE 312


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = +2

Query: 371 PRIIAINATITTPVGILGPFVKSNISATKAMGLNIFTTGSHPDSRTYFAQVLLA 532
           P + A N   T  +  L P   SNI   + MG+ IFT   H  + T   + L A
Sbjct: 820 PIVDADNKLRTENISELLPKQYSNILENRQMGMKIFTDPKHWTTSTKIEKALNA 873


>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
 Frame = +3

Query: 81  NVKIYIRHISIYFDVHID-----LEIEDHRIYTF*KYKIISNI 194
           N  +Y+RHIS+ F +H D      EI+   +     Y+I+SN+
Sbjct: 485 NRPMYVRHISLIFPIHGDDSYFPREIQMFGLINDINYQILSNM 527


>SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 683 LLAPTSTSKSPFIMLAQSHISAILQS 760
           LLAP  TS  P +   QSHI+ +  S
Sbjct: 90  LLAPRRTSPLPSVSAGQSHINIVTAS 115


>SPBC1604.11 |atp17||F0 ATPase subunit F|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 96

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 493 SRFPHIFCPSPVSVNKFSWFYER 561
           SR PH   P   S + FSW+Y++
Sbjct: 37  SRLPHGPAPKKSSNSFFSWYYKK 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,926,679
Number of Sequences: 5004
Number of extensions: 58542
Number of successful extensions: 133
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)