Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11p03r
         (770 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   5.5  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   7.3  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   9.6  

>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -1

Query: 221 IIFIPFTSNNIRYYFVFSERIDSMIFDFKINVYVEVNRNM 102
           I+   ++S N+R Y     ++D  + D ++N Y    R M
Sbjct: 201 IVNTNYSSKNMREYNDPEYKLDYFMEDVELNAYYYYMREM 240


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +2

Query: 485 GSHPDSRTYFAQ 520
           GS PDSR YF++
Sbjct: 92  GSTPDSRDYFSR 103


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 251 LLPFLKLTFICYLDFLLVSE 310
           +LP + ++F+C L F L +E
Sbjct: 241 ILPTVLISFLCVLVFYLPAE 260


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,324
Number of Sequences: 438
Number of extensions: 4680
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)