Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11p01r
         (755 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    40   0.088
UniRef50_A0BIT0 Cluster: Chromosome undetermined scaffold_11, wh...    35   1.9  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 39.5 bits (88), Expect = 0.088
 Identities = 17/18 (94%), Positives = 17/18 (94%)
 Frame = +2

Query: 524 R*VDELTAHLVLSGYWSP 577
           R VDELTAHLVLSGYWSP
Sbjct: 158 RWVDELTAHLVLSGYWSP 175


>UniRef50_A0BIT0 Cluster: Chromosome undetermined scaffold_11, whole
           genome shotgun sequence; n=4; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_11,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 608

 Score = 35.1 bits (77), Expect = 1.9
 Identities = 19/46 (41%), Positives = 26/46 (56%)
 Frame = -3

Query: 177 NLNNCMST*DTLKNNLMIENNKVSNHKFKQNSFDIRLFGSEDAVYI 40
           NLNN +S+    KN+   EN+   N +F+Q S+ I  FGS   V I
Sbjct: 483 NLNNALSSSCVRKNHHEEENDDQQNKQFQQQSYPIDTFGSFQKVII 528


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 663,388,001
Number of Sequences: 1657284
Number of extensions: 12146396
Number of successful extensions: 27134
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 25681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27088
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 62558016040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)