Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11p01r
         (755 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42439-2|AAA83506.1|  162|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z49867-1|CAA90027.1|  312|Caenorhabditis elegans Hypothetical pr...    28   8.2  
U00063-3|AAK18959.2|  446|Caenorhabditis elegans Hypothetical pr...    28   8.2  
AF039042-8|AAC48243.1|  337|Caenorhabditis elegans Serpentine re...    28   8.2  

>U42439-2|AAA83506.1|  162|Caenorhabditis elegans Hypothetical
           protein F19C7.5 protein.
          Length = 162

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/63 (23%), Positives = 30/63 (47%)
 Frame = +3

Query: 228 VTVSRSVGLFTRVQWFVLSCTRPAPTVASRWLTVHLY*FNIV*ILSYSKRLILCVLICNL 407
           +T S+   +F  + W V+      P+  S+W   +   + I  ++S+S   I C+ +C +
Sbjct: 41  ITFSKYENIFLIILWVVIFLLHFLPSYYSKWFPAN---YVISPVVSFSSN-ICCIRLCTI 96

Query: 408 TLN 416
             N
Sbjct: 97  LAN 99


>Z49867-1|CAA90027.1|  312|Caenorhabditis elegans Hypothetical
           protein C33D3.3 protein.
          Length = 312

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +2

Query: 260 TRPVVRTELYA-PGAHCRQSLAHCTSLLIQHC 352
           T P V+ +L + P  H  +  +HCT+++  HC
Sbjct: 117 TMPPVQNKLPSTPPEHVCEKCSHCTAIICSHC 148


>U00063-3|AAK18959.2|  446|Caenorhabditis elegans Hypothetical
           protein F56C9.3 protein.
          Length = 446

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/60 (25%), Positives = 29/60 (48%)
 Frame = -3

Query: 648 VVTIIETLELISQGGWRIYVVDVYGLQ*PLNTRWAVSSSTHLSNKKKKVKIL*CFNFKTN 469
           V+  + +++LI     RI+   VYG++ P+N  W   +    +   K    + C  +K+N
Sbjct: 212 VIMGMASVQLIISSVRRIHDAAVYGIKDPINVSWPTIAIMGSTIAVKLTLFIICQKYKSN 271


>AF039042-8|AAC48243.1|  337|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 25 protein.
          Length = 337

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 296 GAHCRQSLAHCTSLLIQHCVDLILFKETNTLC 391
           G HC   L HC   ++QH  D+ L+     +C
Sbjct: 63  GFHCFFILIHCFGRILQHSSDMYLWMAPLAVC 94


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,648,780
Number of Sequences: 27780
Number of extensions: 303567
Number of successful extensions: 528
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)